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Questions tagged [pls]

Partial Least Squares regression is a statistical method used to find the fundamental relations between two matrices.

84 questions
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PLS regression coefficients in MATLAB and C# (Accord.NET)

I'm trying to perform a partial least square regression analysis in C#. The pls technique performed in MATLAB uses SIMPLS algorithm which provides the beta (matrix of regression coefficients). I do not understand why the matrices are different in…
opto abhi
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PLS as custom model in pycaret

As PyCaret allows incorporating custom models Link I would appreciate any help in enabling PLS (partial least squares), so it can be used along with other models available in PyCaret (for comparisons, tuning, blending, predictions). PLS is a part of…
Inept Adept
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'more segments than observations requested' error with PLS model in R

Here is my data: Sample_ID Trt Litter_Type Plot Pk_1030 Pk_1040 Pk_1050 Pk_1060 Pk_1150 Pk_1160 1 1-T-R-329 Trenched Red 1 0.991 NA NA 1.000 NA NA 2 1-T-W-258 Trenched White 1 NA 0.964 …
Moirajm
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PLS model in R is not recognizing one of my variables

I am working on running a PLS model in R to analyze data I have for FTIR and Enzyme activity. For some reason it is giving me error message that it can't find "Pk_1260" which is one of my columns in my spreadsheet. I have run over analyses on this…
Moirajm
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Structural modelling in PLS-SEM model with seminr (R)

I am trying to compute a PlS-SEM model using seminr, but it doesn't seem to work well: I can't even show the summary of the model. Is it because the structural model isn't well defined? These are the path coefficients in my…
PaulaV
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Plotting PLS Package Object

The code below produces a plot where the labels do not change with the change in data (one principal component to another). library(pls) library(mtcars) set.seed(1) model <- plsr(hp~mpg+disp+drat+wt+qsec, data=mtcars, scale = TRUE,…
phil lawroski
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How to pass additional function in already constrained do.call function creation?

I have created two reprexes below. The one shows the basic do.call working in the expected way. The second one is not working. I am trying to pass functions as arguments to weights in multi_items but I get the error: Error in…
MaskofIllusion
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PLS-DA Formatting a Graph in R

Here is code from an example I was viewing from a mix0mics package about PLS-DA. library(mixOmics) data(srbct) X <- srbct$gene Y <- srbct$class final.plsda.srbct <- plsda(X,Y, ncomp = 3) plotIndiv(final.plsda.srbct, ind.names = FALSE,…
dkcongo
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How can external coefficient values (saved in CSV) to be used to predict model in R?

I have data containing 100 obs, with 50 X-variables and 1 Y-variable. For 100 permutation, I have randomly divided data in 60-40 for training and testing respectively and run a pls (from pls package in R) model for 100 times.. so that I have 100…
MGD
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Can a formative measurement model be adequately modelled in Lavaan or is that only possible with PLS Path Modeling? + ParcelAllocation Function

I am currently faced with the question. Do I include the variable XX reflectively, formatively or as a scale value in the model? Theoretically, there is a lot to be said for a formative measurement model, since it is primarily knowledge that is…
HHKK
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How to predict PLS output manually in case of scaling X?

Hello developpers community, I have a trained PLSRegression model using [sklearn library](scikit-learn.org) I want to know how to implement the command pls_model.predict(x_train) in case of the PLSRegression parameter scale=True Please, I need the…
ayoub zinini
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Caption on top of the graph

Goodnight, I'm starting my studies with R and I'm studying the pls library, through the Introduction to the pls Package file. I'm running the example: `library(pls) data(gasoline) gasTrain <- gasoline[1:50,] gasTest <- gasoline[51:60,] gas1 <-…
Wilson Botelho
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Translate Matlab PLS Regression code to Python

Matlab I have some PLSR regression in Matlab that I need to translate to Python. The Matlab code is as follows: % PLSR with 15 latent variables [~,~,~,~,~,MSEcv] = plsregress(X,y,15,"cv",5,"MCReps",100); rRMSE =…
Manuel Popp
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Use plsda as method in caret::train (R)

I'd like to perform classification with plsda and use the caret::train function to take care of the cross validation. I see that plsda is included in caret, but the example doesn't show it used with train. Instead the train and test sets are…
R Greg Stacey
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Consistent error message while running grouping analysis in 'plspm' package

I am looking for some help in resolving an error using the partial least squares path modeling package ('plspm'). I can get results running a basic PLS-PM analysis but run into issues when using the grouping function, receiving the error…
Jameshannay
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