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Questions tagged [pls]

Partial Least Squares regression is a statistical method used to find the fundamental relations between two matrices.

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Predictor importance for PLS model trained with tidymodels

I'm using tidymodels to fit a PLS model but I'm struggling to find the PLS variable importance scores or coefficients. This is what I've tried so far; the example data is from AppliedPredictiveModeling package. Modeling…
Ian.T
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How can i know if a variable was already declared using lex/yacc?

i have to design an original programming language and provide a syntactic analyzer for it. Now i'm at the point where i should check if a variable was already declared and if it was i shouldn't be able to declare it again. How can i do this?with an…
BiaGH24990
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Different PLS model when using plsr() function in R or Minitab PLS regression menu

I have a PLS model made in R with plsr() function (from package pls); I have chosen the right number of components with cross validation and it runs fine, with high levels of R^2_predicted (>0,85 which is reasonably good for my application). I was…
Marco Fantoni
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Two-step endogenous variables in pls path modeling

I'm working on a PLS-PM model that essentially consists of 24 likert-scaled questions (1-5). I use 6x4 questions (manifest variables) to make up 4 latent constructs/variables. Where I need help is transitioning the model into, essentially, two…
TobiasS
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How to overlap two biplot with different axes using ggplot2?

I am trying to recreate the following plsr biplot: plsr loading plots plsr code df.metric <- plsr(y ~ LMA + LDMC + Thick + Carbon + Nitrogen + Tough, scale = TRUE, validation = "LOO", method = "oscorespls", data = df) extract fungal taxa…
Tellez
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Extract Coefficients/Variables from a PLS in R for Decision Tree or Another Type of Model

I ran a partial least squares (PLS) in R and I want to extract the variables so that I can run either a decision tree or random forest or some other type of model. I tried pls1$coefficients # split data into 2 parts for pls training (75%) and…
westiegirl
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PLS-DA individuals plot with caret package in R

I would like to make a plot of the individuals for PLS-DA with the caret package in R (similar to PCA plot) and add a color for different groups (see picture attached, this is an example for PCA but I would like the same kind of graph for PLS-DA).…
Falco
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Performing multiclass PLS-DA with mlr package in R

I want to use partial least squares discriminant analysis (PLS-DA) to solve a classification problem where there are multiple classes to be predicted. I know PLS-DA is not limited to the two class problem, and I believe that using plsda from the…
HefinIoanRhys
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Sparse partial least square regression in python

I know there is a library for sparse PLS (developed by Chun and Keles 2010; DOI: 10.1111/j.1467-9868.2009.00723.x) in R, is there a library for SPLS in Python so I can readily use? BTW, SPLS is different from "sparse least square regression".…
freeweaver
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Results for PLS changed with sci-kit version

I fitted my data with a PLS model using sci-kit/python. I noticed that my results with Python 3.7/Sci-kit 0.20.1 are about half of the results with Python 2.7/Sci-kit 0.17. Compared to other codes, it seems that the Python2.7/Sci-kit 0.17 results…
Alexander
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R PLS "Error in predict.mvr(...'newdata' does not have the correct number of columns"

I've created a model using R pls and now I'm trying to use the model to predict outcomes based on new data. The original data frame has 2154 variables which I distinguished between the X-matrix and the Y-matrix. So the partitioned X-matrix has 2151…
Ashley
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What do x.scores and y.scores represent in Partial Least Squares Regression in R?

I am analyzing some data in R using Partial Least Squares Regression. As I complete the regression, I stumble upon two matrices called "x.scores" and "y.scores". What are they and what do they represent? #Input: install.packages("plsdepot") …
JasperHsu
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Constructing components from PLSR loadings in R

I want to compute the components for a set of variables using the loadings (weights) from a PLSR using the plsr function. I thought that the components were computed by summing the values of each variable multiplied by the estimated loading…
GabrielMontenegro
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PLS regression in R: Testing alternative model specifications

In R, I would like to test the specification of a partial least square (PLS) model m1 against a non-nested alternative m2, applying the Davidson-MacKinnon J test. For a simple linear outcome Y it works quite well using the plsr estimator followed by…
Lexx
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Adding ellipses to a partial least squares regression (PLS) observation plot

I have two data matrices (predictor matrix and response matrix) on which I am running PLS. My question is 'How does their relationship differ between clean and polluted sites?' I can observe this on plot, but would like ellipses around each group -…
Doro
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