Homeobox

A homeobox is a DNA sequence, around 180 base pairs long, that regulates large-scale anatomical features in the early stages of embryonic development. Mutations in a homeobox may change large-scale anatomical features of the full-grown organism.

Homeodomain
The Antennapedia homeodomain protein from Drosophila melanogaster bound to a fragment of DNA. The recognition helix and unstructured N-terminus are bound in the major and minor grooves respectively.
Identifiers
SymbolHomeodomain
PfamPF00046
Pfam clanCL0123
InterProIPR001356
SMARTSM00389
PROSITEPDOC00027
SCOP21ahd / SCOPe / SUPFAM
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
PDB1ahd, 1akh, 1apl, 1au7, 1b72, 1b8i, 1bw5, 1cqt, 1du0, 1du6, 1e3o, 1enh, 1f43, 1fjl, 1ftt, 1ftz, 1gt0, 1hdd, 1hdp, 1hf0, 1hom, 1ic8, 1ig7, 1jgg, 1k61, 1kz2, 1le8, 1lfb, 1lfu, 1mh3, 1mh4, 1mnm, 1nk2, 1nk3, 1o4x, 1ocp, 1oct, 1p7i, 1p7j, 1pog, 1puf, 1qry, 1s7e, 1san, 1uhs, 1vnd, 1wi3, 1x2m, 1x2n, 1yrn, 1yz8, 1zq3, 1ztr, 2cqx, 2cra, 2cue, 2cuf, 2dmq, 2e1o, 2ecb, 2ecc, 2h8r, 2hdd, 2hi3, 2hoa, 2jwt, 2lfb, 2p81, 2r5y, 2r5z, 3hdd, 9ant

Homeoboxes are found within genes that are involved in the regulation of patterns of anatomical development (morphogenesis) in animals, fungi, plants, and numerous single cell eukaryotes. Homeobox genes encode homeodomain protein products that are transcription factors sharing a characteristic protein fold structure that binds DNA to regulate expression of target genes. Homeodomain proteins regulate gene expression and cell differentiation during early embryonic development, thus mutations in homeobox genes can cause developmental disorders.

Homeosis is a term coined by William Bateson to describe the outright replacement of a discrete body part with another body part, e.g. antennapedia—replacement of the antenna on the head of a fruit fly with legs. The "homeo-" prefix in the words "homeobox" and "homeodomain" stems from this mutational phenotype, which is observed when some of these genes are mutated in animals. The homeobox domain was first identified in a number of Drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates.

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