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Questions tagged [xmgrace]

Grace (originally named Xmgrace) is a 2D plotting tool which allows you to interactively modify plots, to set all kind of plot parameters, change the appearance of your figure, and to save the figure in the format of your choice. It can also be scripted to automate the generation of plot images. Grace also includes many tools for data set analysis, including regression fitting, plotting of functions and data set manipulations.

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xmgrace: Logarithmic histogram binwidths

I have been creating histograms in xmgrace. Some of the bins at the tail end of the histogram are empty, so I want to use logarithmically spaced bins, where the binwidths at the start are very narrow and then become very large (under logarithmic…
tptptpfg
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What numerical integration technique is used for integration of data sets performed in xmgrace?

From the information on topic - Integration of xmgrace, ... the item marked cumulative sum will construct a set composed of the current value of the integral at a given X. Sum only reports just the value on the next line. ... I couldn't find…
Sathyam
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How to make proper animated graph in xmgrace?

I have a series of data files and I just simply want to show them in a movie file where for each data file color, legends will change. So I tried something like below: for i in *dat; do gracebat $i -batch setup.batch -printfile fig-$i.png -hdevice…
baban
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xmgrace .agr File Commands

I am attempting to write a program that will generate .agr files that can be loaded and manipulated in xmgrace. I've dissected an example file that has the kind of formatting I'm looking for, but I'm not 100% sure what every line does. A lot of the…
Metomorphose
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Unable to visualize in VMD as well as in xmgrace

I am new to computational biology. I am using grimaces for simulating a protein. I tried visualising the protein in VMD, but failed. VMD opens, but when I select the .pdb file and click on upload, I can't see the protein. Similarly, I could create…
Raag Saluja
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How to edit graph in xmgrace

I have plotted a graph using xmgrace where I am interested in two extreme portions only on x axis and I do not want to see the region in between. How can I do that?
sharma
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Contour plot in Xmgrace

I have a data file containing 3 columns. Now I want to have a contour plot with xmgrace as I use xmgrace mostly. But somehow, I am unable to do draw it now. Can anyone help me a bit? Thanks in advance. The data is in format shown below: 3.24 4.78…
Tanmoy Chakraborty
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Command line plotting of xvg using grace

I have an xvg file I wish to draw a graph of it using command line grace. However, I have no idea how to read the file into grace nor how to graph it once it is read. Any help is appreciated.
loma
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Bash script which plots data using XMGRACE tool

I have written a bash script that generates files containing data and saves them to a directory. I would like my script to also plot these files using xmgrace. Initially I just need a command line or series of command lines that will create an…
James
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Where can I find a package's excutables installed into a conda environment using conda install?

I was trying to install xmgrace into my linux system(debian 10) in a conda environment. I created an environment using the following command: conda create -n xmgrace_env I then activate this environment: conda activate xmgrace_env I then installed…
Jiang Xu
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bash/sed: producing 2D bar plots from multi-column data

I am dealing with the analysis of multi-column data organized in the following manner: #Acceptor DonorH Donor Frames Frac AvgDist AvgAng lig_608@O1 GLU_166@H GLU_166@N 13731 …
James Starlight
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fifo plot signal python with time-series data

I have a problem with the xmgrace visualization. I have created the fifo which will store the data to be able to do real time series. The problem is that the fifo archive contains all 3 signals and as I run the commands in the terminal I can't find…
George Damianakis
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How to write hbar symbol in xmgrace

The "hbar" is most common symbol used in most physics problems. Xmgrace doesn't include hbar in its symbols library. How can I write hbar symbol in xmgrace plotting software.
chetan sharma
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How to print the 3rd column from multiple files on the y axis with a common axis in XMGRACE (gfortran, Linux terminal)

I have three files of the format '.dat' (available in the link down below), I need to plot their third columns on Y axis while they all have a common first column ( so a common X axis ), how to plot all of them in the same plot on XMGRACE. I know…
Mohd. Farhan Hassan
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How to print into a pdf file a graph generated in xmgrace?

I've a plot in xmgrace which I would like to save separately from the main project as a pdf file. The thing is that when I'm in the print setup selecting the Device there is no pdf option just the usual X11, PostScript, JPE, PNG, etc. Is there some…
Smoluchowski_
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