Questions tagged [tibanna]

I am trying to execute a Snakemake workflow on AWS, and have succeeded in executing my workflow using the command: snakemake --tibanna --use-conda --default-remote-prefix=mybucket/myproject and it works successfully. So far, so good. Unfortunately…

Given a simple rule to join two files, rule run_A: input: "A.txt", "B.txt", "C.txt" output: "Z.txt" resources: disk_mb=100 shell: "cat {input} > {output}" Local execution…

I'm trying to run snakemake on AWS using the --tibanna option. I did setup Tibanna following this tutorial, and my workflow runs well locally. However when I try to run it on the cloud, on my bucket 'tibanna-bucket' using the command snakemake…