Stack Overflow
Stack Overflow

Questions tagged [tabulizer]

tabulizer: Bindings for 'Tabula' PDF Table Extractor Library

tabulizer provides R bindings to the Tabula java library, which can be used to computationally extract tables from PDF documents.

Related tags:

76 questions
1
vote
0 answers

How to increase ram usage in R for parallel programming using foreach

For a research projekt I need to extract information from a lot of pdf documents which are provided online. In order to get the information I use the "tabulizer" package (with the packages "rJava" and "tabulizerjars" installed). With…
Lakue101
  • 11
  • 2
1
vote
1 answer

Importing pdf tables to r with weird headers

Im trying to import this pdf, https://www.mountwashington.org/uploads/forms/2018/01.pdf , to r and get it formatted as a data frame. Is there a way to work with the weird headers and get just the main headers(not the bigger headers like location and…
NotaPowVirgin
  • 69
  • 1
  • 7
1
vote
1 answer

R tabulizer: PDF Encoding Errors (?)

I'm trying to parse some historic crude oil price data using tabulizer and running into what appear to be encoding errors. Below is a reproducible example with one of the files I want to…
Andrew Leach
  • 137
  • 1
  • 10
1
vote
1 answer

R - Trouble installing tabular package

I'm trying to install the tabular package in order to pull tables from a pdf document. I tried the solution outlined here: Recognize PDF table using R, but I can't actually get all the precursor packages installed. I got rJava installed fine, but…
JES
  • 43
  • 5
1
vote
0 answers

R tabulizer package list of matrices dimensions vary for same format PDF tables

I'm using Tabulizer 0.2.2 extract_tables on the following pdf in R on Mac. sales <- "http://www.greenwichct.org/upload/medialibrary/5cd/Residential-Sales-by-Address-10-10-to-10-15.pdf" test <- extract_tables(sales,pages=c(1:10),method="decide") I…
David Lucey
  • 252
  • 3
  • 9
1
vote
1 answer

R tabulizer encoding or security

I have been practicing with tabulizer package in R and have following problem. Unfortunately I can't offer reproducible example, as pdf is firms property, but I will describe problem in detail. I'm trying to read PDF that has start and end date in…
Hakki
  • 1,440
  • 12
  • 26
0
votes
0 answers

Extracting scanned tables in PDF in RStudio using tabulizer

I have crime data in PDF format. The tables in the PDF are scanned copies rather than properly formatted tables. I am trying to use tabulizer package to extract the tables from the PDF but somehow I keep running into the following errors: Error in…
Eric
  • 55
  • 5
0
votes
1 answer

R Extract Table Function from Tabulizer to Data Frame

I'm trying to extract tables from PDFs using the Tabulizer library. I extracted the 1st page with no issue and then converted it to a data frame. After that, I was just cutting the edges of all data frames to get the info required. When trying to…
Humberto R
  • 19
  • 4
0
votes
0 answers

Problem with extract_tables in Tabulizer v0.2.3

I have got a problem with using the extract_tables function in tabulizer (N.B. I realise there are potential issues with Tabulizer that mean it has been removed from CRAN and I wonder if this is one of them and wonder if there is an…
DJD
  • 31
  • 3
0
votes
0 answers

Issues installing tabulizer in R on Mac OS13 and R 4.4

I'm having many issues installing tabulizer in R 4.4 on my Mac OS13. I've reproduced the error message below. I've tried every other suggestion on stack and nothing seems to do the trick. I've verified the rJava is installed. Thanks for any…
oliviafe
  • 1
0
votes
0 answers

Extract table from a PDF with multiple headers (R)

I am trying to get some epidemiological data stored in a pdf that is publicly available link. I am just looking at the data in page 9 (right table). What I would like to achieve is to pass the data into a table, but since I have many headers, it's…
Daniel AG
  • 47
  • 7
0
votes
0 answers

Extract tables from all pdf files in a folder?

I am using tabulizer library to extract tables from pdf in R. It works fine for one file using extract_tables("test.pdf"); It print all the tables in a pdf. (Different Table can have different no of columns) But when i have multiple files in folder…
Thinker
  • 6,820
  • 9
  • 27
  • 54
0
votes
0 answers

How to stop R from reading first row as column name when scraping a pdf

Unfortunately, the pdf I'm scraping is sensitive so I can't share it. It's about 50 pages long and none of the columns have actual column headers so R is taking the first row and using it as the column names. Not a huge deal, I can always add that…
Ophelia Hanson
  • 41
  • 2
0
votes
1 answer

Replace current variable names and move them into rows

After extracting tables from a PDF using tabulizer, my table looks like: A King Blue D Queen Red T Prince Black I want to move the variable names down as observations and replace them with a vector of strings with the actual column…
prayner
  • 393
  • 1
  • 10
0
votes
0 answers

Error with PDF scraping using Tabulizer library

I'm trying to extract tables from several pdf files and used the Tabulizer library. However, as I use the extract_tables function, I keep getting this error: Error in .jcall("RJavaTools", "Ljava/lang/Object;", "invokeMethod", cl, …
saph
  • 1
  • 1
1 2
3
4 5 6