Questions tagged [smith-waterman]

Goodmorning everyone, I am trying to implement my own Smith-Waterman algorithm using R programming, but I am having some trouble in the traceback part, that is, given a matrix m storing the scores, I have to select the cell with the maximum value…

I have used the below code to get the local alignment score between two strings using Smith-Waterman Algorithm. However, I'm getting the required output, I'm finding it difficult to save the result into some variable for further analysis. import…