Multiple imputation using Fully Conditional Specification (FCS) implemented by the MICE algorithm. Each variable has its own imputation model. Built-in imputation models are provided for continuous data (predictive mean matching, normal), binary data (logistic regression), unordered categorical data (polytomous logistic regression) and ordered categorical data (proportional odds).
The first application on missing blood pressure data (Buuren, Boshuizen, and Knook 1999).
Term Fully Conditional Specification describes a general class of methods that specify imputations model for multivariate data as a set of conditional distributions (Buuren et al. 2006).
A while back I conducted multiple imputations with mice() 20 times, and saved these using the following:
for (i in 1:20)
{
write.csv(complete(imp20, i), file=paste("imp", i, ".csv", sep=""))
}
Now I would like to derive an average n and % for a…
I am trying to use the mice procedure in R to impute missing data.
My database is 800k rows
I get this message when I enter this code:
Call the mice package:
library(mice)
Warning message:
package ‘mice’ was built under R version 3.2.5
…
I'm having difficulty creating a loop to identify missing values in a column. I'm using this loop to add columns into a smaller dataset, impute with mice, then merge back. I can't write manually within my function because the output data will be a…
I'm relatively new at all this. I've performed an imputation on metabolomics data, and another colleague has queried the quality of my imputation (I performed predictive mean matching using MICE in R.)
Having looked into this, there isn't any…
I simulated a dataset with missing not at random. And then I used mice()to impute it, but R does not return a complete dataset for me.
My code looks like:
tempData <- mice(data1)
completedData <- complete(tempData)
data1 is the dataset with…
I am trying to impute categorical data through the mice package.
{qualiD = mice(quali,1, seed=123)}
And I get the following error:
{Error in nnet.default(X, Y, w, mask = mask, size = 0, skip = TRUE,
softmax = TRUE, : too many (2184)…
R kept crashing when I attempted to use mice with my dataset so I did my mi in SPSS v. 24. I then imported the multiply imputed data into R as Imp5N2NPV4_2_17.
I want to convert that dataframe into mids to proceed with my analyses, but am getting an…
I've tried to create a test data.frame to demonstrate my question but my r capacity isn't quite strong enough to even do that. I am not in a position to share my true database. I hope my question can stand on its own.
I am working with a nested…
How can I run Multivariate Imputation by Chained
Equations with mice() for this dataset, using rows 1:10, but predicting only for row #11?
library(mice)
library(car)
df = mtcars[c(1:10), c(3:5)]
df[c(1:3), c(1)] = NA
df[c(4:7), c(2)] =…
I have a dataset with missing values and therefore run the mice function as a imputation method. Until here everything worked fine.
Now I want to compare the distribution of original and imputed dataset with the lattice package using xyplot,…
I imputed a data using the mice package in R. The dataset contains a factor variable with n levels of factor. I would like to calculate the proportion of each factor and return the standard errors accounting the imputed values. Below is a sample…
I am having problem while plotting missing/imputed values. When I try to run this code: (demo is the name of the dataset)
mice_plot <- aggr(demo, col=c('navyblue','yellow'),
numbers=TRUE, sortVars=TRUE,
…
I am getting the error when i run the below code for imputing the missing values through MICE package in R
url <- "https://raw.githubusercontent.com/selva86/datasets/master/Cars93_miss.csv"
ca <- read.csv(url)
im_ca <- mice(ca, MaxNWts = 4000)
iter…
I got a few questions, I couldn't really find anything on with the documentation unless I'm missing something or don't understand imputation process/logic.
Basically the most important is that since sometimes the 'imputed' values are different, I'd…
