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Questions tagged [mamba]

Mamba is a Python-based CLI conceived as a drop-in replacement for conda, offering higher speed and more reliable environment solutions.

Mamba is a fast, robust, and cross-platform package manager.

It runs on Windows, OS X and Linux (ARM64 and PPC64LE included) and is fully compatible with conda packages and supports most of conda’s commands.

https://github.com/mamba-org/mamba

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How to make pip do as well as conda in solving for python version during environment creation and update

One of the reasons I prefer conda is that, given a list of packages in a create, some of which depend on python: mamba env create -f environment.yml it will solve for and install the latest version of python that permits version alignment of all…
user3673
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Downgrade Python without change behavior of base environment

I'm trying to switch over to using Mamba for my Python installation (Windows 10). Previously, I've just been installing Python using the installer from python.org and pip. However, I have some one-off scripts I'd like to be able to run in a default…
Jigsaw
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How to include xelatex in a mamba environment?

Running a particular Python program within my environment tries to produce PDF output, which requires "xelatex". I tried adding "xelatex" to the environment creation command: mamba create -n notebook_rapidsai_env ... python jupyter xelatex but…
Mark Bower
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How can I prevent an out of memory error in Github Actions?

I'm working on a project that uses the repo2docker Github Actions workflow: https://github.com/jupyterhub/repo2docker-action However, the required packages have grown and on mamba env update, the runner crashes, due to what I believe is an out of…
QuasarSam
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Conda install Mamba Error: Collecting package metadata (repodata.json): / Killed

I am trying to install mamba through conda on my linux terminal on my chormebook. Please help. I need to install this for a final exmam. My professor just tells me look online. I am not a programmer and I am new to bioinformatics so please provide…
kutura.bailey
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Conda/Mamba: What does it mean to "solve an environment", and how exactly does it work?

Whenever I create or modify an environment using conda or mamba, the following always appears: Solving environment: ...working... When it works straightaway, it becomes this: Solving environment: ...working... done When it doesn't work…
themagicalkamja
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How to get libphp.so or liphp8.so file in conda or micromamba environment

I have installed "php" in micromamaba environment. Php 8.1.5 is installed correctly, but libphp*.so is not found in any of lib or bin paths. I have installed even httpd too. My website depends on libphp.so file. command used: micromamba install…
Ramesh Jangama
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Conda Environment Exception

I am trying to use TOBIAS by using snakemake pipeline https://github.molgen.mpg.de/loosolab/TOBIAS_snakemake This is for Motif Analysis. I do these steps: git clone https://github.molgen.mpg.de/loosolab/TOBIAS_snakemake.git cd TOBIAS_snakemake conda…
Mitu Vinci
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Cannot run python from conda env

I installed mamba (can be seen as conda) in Ubuntu 22.04 LTS. The Ubuntu is run in the Termux app in my Android mobil phone. After I created and activated a new environment mamba create -n general python=3.9 && mamba activate general, and run…
13 FAR
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Package conflict resolution - Conda vs Mamba

I'm trying to install packages. First I tried Conda: conda -c conda-forge install fiona tensorflow gdal numpy keras geopandas shapely pytorch ... Found conflicts! Looking for incompatible packages. ... Then I tried using Mamba: mamba -c conda-forge…
Jelphy
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How to download SHAP (SHapley Additive exPlanations) using anaconda?

I am trying to install SHAP (SHapley Additive exPlanations) for machine learning using Anaconda. I have 3.9 Python version. Also, i have tried all of these commands but none of them worked: conda install -c conda-forge shap conda install -c…
ahmad alomari
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mamba equivalent of `conda shell.bash hook`

I'd like to use mamba activate [env] in a shell script. What would be the equivalent of conda shell.bash hook? I've tried mamba shell.bash hook and mamba shell hook -s posix.
dimid
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mamba exec raises CommandNotFoundError: No command 'conda exec' in GitLab CI

I'm trying to execute mamba exec quarto render --execute --to html --output-dir public using GitLab self-hosted CI and I'm getting CommandNotFoundError: No command 'conda exec'. I already patched the PATH environment variable. Why conda exec is…
Raniere Silva
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How to make conda or mamba verbose using environment variable?

I am looking for an environment variable I can set to make mamba verbose while it is resolving the dependency to see if it is stuck at a certain stage.
Abdulla Hammad
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How to install every package in base Conda env from mambaforge?

I just installed mambaforge on Windows 10, I don't have Anaconda installed yet as suggested in mamba docs. What I want to do achieve is to have the same packages installed you get when you install Anaconda from scracth. Is there a way to retrieve…
NicoE
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