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Questions tagged [mamba]

Mamba is a Python-based CLI conceived as a drop-in replacement for conda, offering higher speed and more reliable environment solutions.

Mamba is a fast, robust, and cross-platform package manager.

It runs on Windows, OS X and Linux (ARM64 and PPC64LE included) and is fully compatible with conda packages and supports most of conda’s commands.

https://github.com/mamba-org/mamba

109 questions
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conda/mamba can't solve tensorflow_probability and tensorflow dependencies

Problem I am trying to create a conda environment and it seems that conda/mamba can't resolve tensorflow_probability dependencies with respect to tensorflow. More context I am trying to create a conda environment with the following requirements…
Luca Clissa
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Editable module ModuleNotFoundError even if installed and running with python in command window

I am going completely mental as I fail to understand and keep my python environment running. So : I have a python environment running under Miniconda 3 and that I manage through an environment.yaml file Environment is used to develop within…
Apotygma
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Install TensorFlow latest build using Mamba

I want to use mamba install to install the latest TensorFlow distribution (2.10 or 2.9.1 at least) with CUDA enabled. I tried the following: mamba install -c anaconda tensorflow==2.9.1=gpu_py310* mamba install -c anaconda…
Otávio Augusto Silva
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New mamba environment force torch CPU and I don't know why

When creating a new mamba (conda) environment, I only get Pytorch's CPU package. Does anyone know how to ensure/force the GPU version? Even if, the first thing I installed is cudatoolkit it keeps getting the CPU package. I tried with version 11.6…
Diewyns
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Why does conda package install complain about both python abi 3.7 and 3.9?

I'm trying to install a package in a conda environment (python=3.9), and I get the following error: Encountered problems while solving: nothing provides python_abi 3.7.* *_cp37m needed by [package] I then tried installing python_abi=3.7 just to…
bread
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mamba nothing provides requested compilers

I am trying to install some packages with mamba, but encountering a problem where it can't seem to find the packages to install. I first installed miniconda, then I installed mamba using conda install mamba -c conda-forge. Then I created an…
stackoverflowing321
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mamba fails to create env

I had just installed Anaconda from anaconda.com. The installation proceeded smoothly. After that, I was trying to create a new environment from this environment.yml file. (nbdev.yml) name: nbdev channels: - fastai - defaults -…
Tejas Shetty
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How to update permissions on base image for Docker? (mambaorg/micromamba)

Here's my Dockerfile: # v2023.8.21 # ================================= # Micromamba # ================================= FROM mambaorg/micromamba:1.4.9 ARG ENV_NAME SHELL ["bash"] WORKDIR /tmp/ # Data RUN mkdir -p /volumes/ RUN mkdir -p…
O.rka
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Cloning environment with micromamba

It seems micromamba is missing a clone environment option, or is it just named differently? Mamba's help micromamba create -n envname --help does not seem to show any clone-like option and standard conda's conda create -n envname --clone oldenv…
Smarty77
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Is this package incompatibility a bug in the requierements?

After creating a clean environment with mamba pinning the python version and installing pylint, I get an apparent incompatibility between the pylint and python versions. Is this a bug in the package requierements? In Linux, I have created a mamba…
darmual
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Add `activate.sh` and `deactivate.sh` to Conda Environment Created From YAML FIle

I want to include activate.sh and deactivate.sh scripts in a Conda environment that is created for users when they do conda env create -f environment.yaml. Is there a way to have these scripts automatically copied into the $CONDA_PREFIX/etc/conda…
Batman
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conda environment.yaml package conflict

When I'm trying to build a git project, the environment,yml won't work properly. It seems like some package conflict, but other user doesn't seem to run into this issue, and I couldn't figure out a solution. My conda version is conda 4.8.2,and down…
brian2lee
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Incompatible packages in conda - error occurs during mamba env create command

For a long time, a project has been installing packages with mamba env create --file environment.yaml. Suddenly, from one day to another, environment stopped working and started throwing below error. What's the cause and how to fix it? Could not…
Lukasz Dynowski
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Cannot install R Bioconductor packages via Conda

I wanted to start using Conda environments on my new computer (macOS), primarily for bioinformatic analysis. However, I cannot bring it to download Bioconda bioconductor packages. I tried several approaches right now, but could not accomplish a…
Lukas
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Mambaforge cannot collect package metadata for perl-dbi (MacOS M1), to install snakemake

I am really new to anything bioinformatics, so sorry if things are not that clear. I am trying to run a snakemake pipeline for genome analysis. I have installed mambaforge for MacOSM1 by downloading the Mambaforge-MacOSX-arm64.sh file from…
Clara Apicella
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