Questions tagged [illumina]

I am trying to analyze Differentially Methylated Genes based on the ChAMP package on GEO data (GSE166427). Although, I want to know how should I produce the "Sample Sheet.csv" file to do my analysis because there is no samplesheet file between…

I am relatively new to R and am having an issue with lme4. I want to use my methylation (m-values) and my phenotypic datasets. However, when I run my code I get an error about different variable lengths. I believe I need to combine these datasets…

I've successfully used Illumina BaseSpace to download one off dataset, access to the dataset in the project is granted with an access token. Ideally I'd like to avoid having to authenticate with a browser repeatedly and would like to know exactly…