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Questions tagged [expectation-maximization]

Expectation Maximization (often abbreviated EM) is an iterative algorithm that can be used for maximum likelihood estimation in the presence of missing data or hidden variables.

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EM algorithm with Beta Distribution in R

I would like to write R code to build the dirichlet mixture model. The loglikelihood I used for the beta distribution is as below: (,)=(−1)ln¯+(−1)ln(1−)¯+lnΓ(+)−lnΓ()−lnΓ() and I need help for initialising parameters (alpha, beta and setting…
hollyjolly
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Python package for parameter estimation in PGMs with continuous variables

I am looking for a Python package to work on a probabilistic graphical model (PGM) with categorical and continous variables. Some nodes in the PGM are latent variables. The conditional probabilities are defined by continuous functions such as Beta…
Kowshika
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Modal regression

enter image description here I am working on a problem of modal regression using EM algorithm. The image shown here is achieved using mean shift algorithm by Chen et . However, using EM, I am not able to obtain a multiple estimated lines. Can …
user491683
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How can one add/remove components from a sklearn gmm object for further warm start?

The sklearn.mixture object GaussianMixture provides the framework to fit a GMM to provided data, but how can one add/remove components from a sklearn gmm object for further warm start?
pietro_molina
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Defining the EM parameters

I have a list of observations where each data point is a pair of a time expression (e.g. night, morning) and an hour in a 12-hr clock (i.e. 1, 2, ..., 12): Y = {}_i={1,...,N}. I would like to estimate the distribution of hours in a 24-hr…
Vered
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Expectation Maximization in Python

I'm tasked with implementing the expectation-maximization algorithm for a class I'm in. In the notes, my professor evaluated the iterative formulas used in the code, I've checked them and they're written correctly. The question asks us to create…
NoVa
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Python- how to get top terms per cluster after using EM clustering with doc2vec input file?

I have collection of 300 docs. I used doc2vec as input file for EM clustering. vector size = 30 I used WEKA to do the clustering. The result is in arff…
Noor
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Compute probability of parameters given data in a bayesian network with pyMC3

I’m new to pyMC3 and I would like to know if it is possible to use it to solve the following problem: I have a bayesian network (image of my BN: Bayesian network of my problem) and I don’t know the parameters of the distributions of A,B,C,D and S, I…
danitalpi
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Does anyone have a routine example implementation of Numerical Recipes 3rd Ed estep/mstep find in gaumixmod.h header?

I'm starting with the use of "Numerical Recipes 3ed", and I would like to implement the "estep" and "mstep" of the chapter 16, I can't find examples to help me and allow me to get started without difficulty and manage to exploit the gaumixmod.h…
RA AM
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Is this code for Gaussian Mixture Model correct?

I am learning GMM to do color segmentation. I found a good resource online with the following GMM code: import matplotlib.pyplot as plt from matplotlib import style style.use('fivethirtyeight') import numpy as np from scipy.stats import…
Marlborough321
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EM algorithm python on MNIST image data

I need to implement the EM algorithm for fitting a GMM on image data (pixels). The data was provided as a .mat file. The data is similar to the MNIST dataset. So it's a matrix of images with the shape 784 x 1990. There are 1990 images, and each…
zelda26
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Converting Mat to one dimensional float array for EM?

I'm trying to convert a Python code to Java. However, I'm unable to find a way to create the sample to train the Expectation Maximization as it should be a one-channel matrix with 2 values (S and V from HSV Color Space) as below: row 0: S, V row 1:…
Tarcisiofl
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Perl Expectation Maximization of log-odds scores of DNA sequences

My overall goal for this code is to find the motif (smaller sequence) in each DNA sequence that will report a maximum log-odds score based on a log-odds scoring matrix. The .txt file I am searching through looks like this: >Sequence…
William
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Including time dependency in gaussian mixture model/expectation–maximization model?

I'm working on a time series dataset and therefore while fitting the GaussianMixture() function from the scikit-learn package, I need to make each feature(timestamp) dependent. However, I don't find a parameter to customize the covariance matrix…
Cocoa Wang
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Expectation Maximization implementation

I am not sure as to what I am doing wrong with this code. I am trying to implement the expectation maximization algorithm(pseudo code screenshot below) and I think I am not minimizing the Beta correctly. Any thoughts on how I can fix this? This is…
ersh
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