Questions tagged [dockstore]
2 questions
1
vote
1 answer
Docker container pulled with singularity 2.5.2 works with 3.1.1 exec, but fails if I pull with 3.1.1
If I pull a docker image with singularity 2.5.2 it runs fine with the 3.1.1 exec:
$ /software/singularity-3.1.1/bin/singularity exec dockstore-cgpwxs_singularity_bug_report_pull_2.5.2.simg samtools view
Usage: samtools view [options]…
Keiran Raine
- 163
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2 answers
Does dockstore-tool-samtools-index have GATK/BAM/Chromwell already configured?
Just wanted to know if the docker image with name dockstore-tool-samtools-index which is available here "https://quay.io/repository/cancercollaboratory/dockstore-tool-samtools-index"
and given as an input to the Google Genomics API…
