Questions tagged [diagrammer]

DiagrammeR is a R package for creating diagrams.

DiagrammeR is a R package for creating graph diagrams using text in a Markdown-like syntax. Mermaid (.mmd) or Graphviz (.gv) files can be edited directly within the IDE for .

Graphviz attributes allow you to style your Graphviz graph. Combinations of attributes for nodes, edges, clusters, and for the entire graph provide for highly-customized layouts.

All Graphviz attributes are specified by name-value pairs. Thus, to set the fillcolor of a node abc, one would use

abc [fillcolor = red] Similarly, to set the arrowhead style of an edge abc -> def, one would use

abc -> def [arrowhead = diamond] Quotation marks are important only for multiword attributes, such might be used in the label attribute.

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Features The Graphviz layout programs take descriptions of graphs in a simple text language, and make diagrams in useful formats, such as images and SVG for web pages; PDF or Postscript for inclusion in other documents; or display in an interactive graph browser. Graphviz has many useful features for concrete diagrams, such as options for colors, fonts, tabular node layouts, line styles, hyperlinks, and custom shapes.

Roadmap dot - "hierarchical" or layered drawings of directed graphs. This is the default tool to use if edges have directionality.

neato - "spring model'' layouts. This is the default tool to use if the graph is not too large (about 100 nodes) and you don't know anything else about it. Neato attempts to minimize a global energy function, which is equivalent to statistical multi-dimensional scaling.

fdp - "spring model'' layouts similar to those of neato, but does this by reducing forces rather than working with energy.

sfdp - multiscale version of fdp for the layout of large graphs.

twopi - radial layouts, after Graham Wills 97. Nodes are placed on concentric circles depending their distance from a given root node.

circo - circular layout, after Six and Tollis 99, Kauffman and Wiese 02. This is suitable for certain diagrams of multiple cyclic structures, such as certain telecommunications networks.

Links:

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graphviz / DiagrammeR - subgraphs top to bottom, then left to right

I'm trying to recreate a diagram where I have 5 different subgraphs or "clusters." I want to have two "columns" of subgraphs, with the first column having three subgraphs and the second having second. This is the code I've written so far, but the…
user122514
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diagrammeR/GraphViz - justify node text if node text is multi-line substitution label

I am using substitution labels (@@) with diagrammeR and Graphviz syntax. I have seen previous questions about justification of node labels such as this one when the labels are in-line text, but I am wondering how to justify node text generated from…
maraflan
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R diagrammer package not recognizing tenth footnote

I have noticed that I am getting errors in my footnote interpretations over the last week or so. I tried updating to the latest version as well as the latest github download. I have also updated R and R studio to the latest versions. Starting with…
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Creating flowchart with DiagrammeR nodes and edges instead of graphviz

I would like to create a flowchart using the DiagrammeR nodes and edges functionality with R instead of using the graphviz wrapper function. However, I can't figure out how to make the edges straight to make it nice. This is the graphviz solution…
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Better way of scaling a dgr_graph within a shiny app

I'm building a shiny app that is supposed to show a bupaR process_map, which is kind of working. Sadly the process_map()-function returns a dgr_graph-object, which can't be rendered with the DiagrammeR::renderGrViz() or…
Someone2
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graphViz/dot: Adjusting node placement and edge shape

I have a graph which can be summarized in English as: A -> [B -> C -> D] -> E B -> A E -> B Where the square braces indicate a subgraph, with a box drawn around it. I have implemented it in graphViz/dot as follows: digraph { rankdir = LR graph…
aaron
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How to use shinyjs to link graphviz node data to the Shiny UI htmlOutput?

I'd like to be able to select a node (with tooltip) in my graphviz diagram, and have the text information associated with that node be output in the shiny UI (e.g. htmlOutput/renderUI). This question follows on from another question (Is it possible…
rob99985
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Cannot render flow chart in R shiny

I want to display a flow chart in shiny, it just not showing in shiny browsers, but displays in the viewer pane in rstudio. library(shiny) library(DiagrammeR) ui <- fluidPage( plotOutput(outputId ="temp") ) server <- function(input, output,…
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Creating a single graph with two different layouts (e.g. circle outside and unordered inside)

I'm attempting to produce a graph using graphviz that produces a visualisation like this fantastic one(!;…
rob99985
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Network graph with mult-line labels?

I am trying to create a network graph of nodes with labels that contain multiple lines. The lines should have different font size and style to convey information about that node. The details must be displayed at all times, not using a mouse-over…
Tim
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DiagrammeR: Create graph from minimal node and edge data frame

I'm trying to use the DiagrammeR package to create a graph based on two simple data frames created by hand. The resulting graph should simply have two nodes ('a' and 'b') and one edge connecting them ('a' -> 'b'). Based on the documentation, it…
bschneidr
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Problem with Gantt chart plotting in shiny with DiagrammeR

I have a problem displaying Gantt plots in Shiny using DiagrammeR's mermaid plotting function. Everything is executing as expected however the plots are displayed in the R studio's viewer not on the shiny page (which has a tabPanel for the plot to…
Peter
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Meta-analysis flowchart

Is it possible to reproduce a meta-analysis type of flowchart as the one in the picture below using any R tool? My attempt was using mermaid: diagram = " graph LR subgraph Screening b1-->b2 end subgraph Eligibility c1-->c2 end …
lf_araujo
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R Studio "Save as Image" crops the images for packages like 'networkD3' or 'Diagrammer'

System details RStudio Edition : Desktop RStudio Version : 1.1.463 OS Version : Windows 7 Professional R Version : 3.5.1 Steps to reproduce the problem Run the following code in R Studio library(networkD3) URL <- paste0( …
stackinator
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How to assign Network information to DiagrammeR grViz using vector

I have an adjacency matrix and want to use DiagrammeR Graphviz language to create a digraph of it. Bellow is my adjacency matrix MM MM<-matrix(c(1,1,0,0,0,1,1,1,1,0,0,1,1,1,0,0,1,0,1,1,0,0,0,1,1), 5, byrow=T) colnames(MM)<-c("A", "B", "C", "D",…