I am looking for the best practices with PHPUnit testing a project on KohanaPHP framework.
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Kohana has a phpUnit module which is maintained by Ben Rogers, Chris Bandy, Isaiah DeRose-Wilson, Jeremy Bush, Kiall Mac Innes and Sam Clark.
You can find the module below and the documentation can be found here and here.

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1The above link is now a 404. This looks like the new place to go for it -- http://dev.kohanaframework.org/projects/phpunit – danbgray Nov 10 '12 at 20:19
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1Actually, this article http://embrangler.com/2010/04/testing-in-kohana-3/ looks way better than the official docs / that project. There is an open ticket on the official phpunit that has been open since '09 – danbgray Nov 10 '12 at 20:21