How do I go about changing the password of a JKS keystore(and all entries in it) from java code?
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I think you can rewrite keystore to the same file but different password with this method

korifey
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Perhaps expect4j is the answer. http://code.google.com/p/expect4j/
It ports original expect package to java and it interacts well with prompts and stuff

Alfabravo
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