So I am trying to use a bipartite network to link the influences of a group of species to microbiome data consisting of sequence reads for hundreds of other species. Any KIND and HELPFUL advice is appreciated!
I have been able to run a simple co-occurrence network, but am unclear on how to morph this into a more directed network. Bonus if I can do it in R and double bonus if using iGraph.
Below is an example of the type of data I have:
