Python3 `pandas.DataFrame.ffill()` got an exception "TypeError: No matching signature found" caused by 'dtype'

Question

Problem

I used defaultdict to specify the dtype of each column. When I tried to ffill the dataframe, I got the following error. I think the error was caused by the dtype, but I have to specify it because my data is too large (1394265 rows × 300 columns) and I don't have enough memory. How can I solve the problem and ffill correctly?

---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
<ipython-input-42-feb22c34d9cb> in <cell line: 4>()
      2 dtype['timestamp']=np.int64
      3 table1=pd.read_csv(data_root+'err_reprdc_sample.csv',index_col=0,dtype=dtype)
----> 4 table1.ffill()

14 frames
/usr/local/lib/python3.10/dist-packages/pandas/util/_decorators.py in wrapper(*args, **kwargs)
    329                     stacklevel=find_stack_level(),
    330                 )
--> 331             return func(*args, **kwargs)
    332 
    333         # error: "Callable[[VarArg(Any), KwArg(Any)], Any]" has no

/usr/local/lib/python3.10/dist-packages/pandas/core/frame.py in ffill(self, axis, inplace, limit, downcast)
  11781         downcast: dict | None = None,
  11782     ) -> DataFrame | None:
> 11783         return super().ffill(axis=axis, inplace=inplace, limit=limit, downcast=downcast)
  11784 
  11785     @overload

/usr/local/lib/python3.10/dist-packages/pandas/util/_decorators.py in wrapper(*args, **kwargs)
    329                     stacklevel=find_stack_level(),
    330                 )
--> 331             return func(*args, **kwargs)
    332 
    333         # error: "Callable[[VarArg(Any), KwArg(Any)], Any]" has no

/usr/local/lib/python3.10/dist-packages/pandas/core/generic.py in ffill(self, axis, inplace, limit, downcast)
   6985             Object with missing values filled or None if ``inplace=True``.
   6986         """
-> 6987         return self.fillna(
   6988             method="ffill", axis=axis, inplace=inplace, limit=limit, downcast=downcast
   6989         )

/usr/local/lib/python3.10/dist-packages/pandas/util/_decorators.py in wrapper(*args, **kwargs)
    329                     stacklevel=find_stack_level(),
    330                 )
--> 331             return func(*args, **kwargs)
    332 
    333         # error: "Callable[[VarArg(Any), KwArg(Any)], Any]" has no

/usr/local/lib/python3.10/dist-packages/pandas/core/frame.py in fillna(self, value, method, axis, inplace, limit, downcast)
   5633         downcast: dict | None = None,
   5634     ) -> DataFrame | None:
-> 5635         return super().fillna(
   5636             value=value,
   5637             method=method,

/usr/local/lib/python3.10/dist-packages/pandas/core/generic.py in fillna(self, value, method, axis, inplace, limit, downcast)
   6811                 return result
   6812 
-> 6813             new_data = self._mgr.interpolate(
   6814                 method=method,
   6815                 axis=axis,

/usr/local/lib/python3.10/dist-packages/pandas/core/internals/managers.py in interpolate(self, **kwargs)
    420 
    421     def interpolate(self: T, **kwargs) -> T:
--> 422         return self.apply("interpolate", **kwargs)
    423 
    424     def shift(self: T, periods: int, axis: int, fill_value) -> T:

/usr/local/lib/python3.10/dist-packages/pandas/core/internals/managers.py in apply(self, f, align_keys, ignore_failures, **kwargs)
    350                     applied = b.apply(f, **kwargs)
    351                 else:
--> 352                     applied = getattr(b, f)(**kwargs)
    353             except (TypeError, NotImplementedError):
    354                 if not ignore_failures:

/usr/local/lib/python3.10/dist-packages/pandas/core/internals/blocks.py in interpolate(self, method, axis, index, inplace, limit, limit_direction, limit_area, fill_value, downcast, **kwargs)
   1256         data = cast(np.ndarray, data)  # bc overridden by ExtensionBlock
   1257 
-> 1258         missing.interpolate_array_2d(
   1259             data,
   1260             method=method,

/usr/local/lib/python3.10/dist-packages/pandas/core/missing.py in interpolate_array_2d(data, method, axis, index, limit, limit_direction, limit_area, fill_value, coerce, downcast, **kwargs)
    237             raise ValueError("Cannot pass both fill_value and method")
    238 
--> 239         interpolate_2d(
    240             data,
    241             method=m,

/usr/local/lib/python3.10/dist-packages/pandas/core/missing.py in interpolate_2d(values, method, axis, limit, limit_area)
    813     # _pad_2d and _backfill_2d both modify tvalues inplace
    814     if method == "pad":
--> 815         _pad_2d(tvalues, limit=limit)
    816     else:
    817         _backfill_2d(tvalues, limit=limit)

/usr/local/lib/python3.10/dist-packages/pandas/core/missing.py in new_func(values, limit, mask)
    847             return result.view(values.dtype), mask
    848 
--> 849         return func(values, limit=limit, mask=mask)
    850 
    851     return cast(F, new_func)

/usr/local/lib/python3.10/dist-packages/pandas/core/missing.py in _pad_2d(values, limit, mask)
    879 
    880     if np.all(values.shape):
--> 881         algos.pad_2d_inplace(values, mask, limit=limit)
    882     else:
    883         # for test coverage

/usr/local/lib/python3.10/dist-packages/pandas/_libs/algos.pyx in pandas._libs.algos.__pyx_fused_cpdef()

TypeError: No matching signature found

Reproduce the problem

import pandas as pd
import numpy as np
from collections import defaultdict

data_root='./'
dtype=defaultdict(np.float16)
dtype['timestamp']=np.int64
table1=pd.read_csv(data_root+'err_reprdc_sample.csv',index_col=0,dtype=dtype)
table1.ffill()

You can download the sample file called 'err_reprdc_sample' and adjust the data_root.

timestamp	000001.XSHE	000002.XSHE	000596.XSHE
20220628092500000	14.47
20220628092500010		18.5
20220628092500020			234.1
20220628092500040
20220628092500050

What I have tried

table1=pd.read_csv(data_root+'err_reprdc_sample.csv',index_col=0)
table1.ffill()

or Changing np.float16 to np.float32 works fine but it will take too much memory.

`np.iinfo` provides info for integer dtypes. `np.half` is a float; `np.finfo(np.half)` — hpaulj, Jun 13 '23 at 04:18

score 0 · Answer 1 · answered Jun 13 '23 at 03:51

0

Try this:

table1.convert_dtypes().ffill()

Or:

import pandas as pd
import numpy as np
from collections import defaultdict

data_root = './'
dtype = defaultdict(np.float64)  # Use np.float64 instead of np.float16
dtype['timestamp'] = np.int64
table1 = pd.read_csv(
    data_root+'err_reprdc_sample.csv',
    index_col=0,
    dtype=dtype,
)
table1.ffill()

Explanation

The type np.float16 can sometimes behave unpredictably with certain pandas operations, as it is not as widely supported or tested as np.float32 or np.float64. Your code is not working because of that.

In the first solution, I'm simply converting the data types prior to calling ffill. In the second solution, I've replaced np.float16 with np.float64. Both modifications to the original code were made due to the reason previously stated.

answered Jun 13 '23 at 03:51

Ingwersen_erik

1,701
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Yes, your solution works, but my memory runs out, haha. The most stupid way I can think of is to split the data frame and process them separately. – EvanHong Jun 13 '23 at 05:19
@EvanHong, have you tried using `dtype = defaultdict(np.float32)`? If that doesn’t work neither, you might consider using `PySpark` instead of Pandas. The newest versions of `PySpark` even have a copy of `Pandas` built-in – Ingwersen_erik Jun 13 '23 at 07:43
Yes, I tried. Even though it works well and solves the problem, it consumes too much memory. – EvanHong Jun 14 '23 at 01:20

Python3 `pandas.DataFrame.ffill()` got an exception "TypeError: No matching signature found" caused by 'dtype'

Problem

Reproduce the problem

What I have tried

1 Answers1

Explanation