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Currently I am trying to filter some data for single cell RNA sequencing, and this process requires the use of python. I am trying to run the following codes and I am facing some errors.

%pylab inline

import warnings
warnings.filterwarnings("ignore")

from SCCAF import *

The image of the error message is attached with this post.

error message

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I would also like to say that I have elementary knowledge in working with python, so it can be some issue from my side that I am not able to solve. Also currently I am using google colab to run this code. Can any one please me with this problem.

I have tried installing SCAAF and scanpy using pip install, but still no progress.

vimuth
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Arka26
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  • You are missing SCCAF package. You should install SCAAF package. Common way is with `pip install`. You said you done it... check if you done it the proper way, I never used Google Collab, so maybe you installed the package in a wrong location, or with a wrong procedure. – Poshi Mar 23 '23 at 11:56
  • Try with `%pip install SCCAF` (https://stackoverflow.com/questions/51342408/how-do-i-install-python-packages-in-googles-colab) – Poshi Mar 23 '23 at 11:57
  • This is the first time for me using python and I have only elementary knowledge. I can share the file with the code. Can you please try running it explain me in brief about the whole process? – Arka26 Apr 01 '23 at 17:43
  • link for the code files- https://drive.google.com/drive/folders/1GxKSOTj8Nchm4lPqg-YBXDOfceuQ2tdV Can you please run the scripts by yourself and help me running the whole process. – Arka26 Apr 01 '23 at 17:45
  • Sorry, I almost never used notebooks, so I won't be of much help here. My advice is only based on my Python experience and Google/SO help. Also, your issue does not seem related to the code but to your environment, so checking your code won't be of much help. – Poshi Apr 01 '23 at 17:57

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