I'm trying to create a for loop allowing me to run an AMICA for every participant on EEGLab using Matlab. Here's the script. On each participant, I have to click "OK" on a window and I'd like instead to let the program run everything. Is there a way to simply run an AMICA for each participant without having to press "OK" ? I thought setting the EEG.etc.auto_ok to 2 would have worked but it doesn't seem to be the case. Thanks :)
for s=1:nsubj
fprintf('\n******\nProcessing subject %s\n******\n\n', subject_list{s});
% Path to the folder containing the current subject's data
data_path = [home_path subject_list{s} '/'];
sname = [data_path subject_list{s} '.set'];
if exist(sname, 'file')<=0
fprintf('\n *** WARNING: %s does not exist *** \n', sname);
fprintf('\n *** Skip all processing for this subject *** \n\n');
else
EEG = pop_loadset('filename', [subject_list{s} '.set'], 'filepath', data_path);
EEG = pop_runamica(EEG);
EEG.etc.auto_ok = 2;
EEG.setname = [EEG.setname '_amicadone'];
EEG = pop_saveset(EEG, 'filename', [EEG.setname '.set'], 'filepath', data_path)
end
end
I tried using the help functionality on Matlab, I tried adding arguments on the pop_runamica() function and I tried asking ChatGPT.