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I have 38 samples in vcf format and need to generate maf files for each to visualise them using MesKit in R. Some of the samples are matched tumour and normal and I was wondering if there is a way to generate one single maf file for the two vcf files.

Would I just merge the two vcfs before running vcf2maf or is there another way to do this?

CH1374
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  • Please edit the question to limit it to a specific problem with enough detail to identify an adequate answer. – Community Jan 31 '23 at 14:09

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