Ete3 build - ValueError: Error parsing Phyml result

Question

Hello,

I am using ete3 build to build a phylogeny of my target species. I ran the following command:

ete3 build -a eteinput.faa --cogs outfile.tab -o test1_results -m sptree_fasttree_85 -w full_modeltest_bootstrap --clearall --cpu 20


I am getting the following error:

Traceback (most recent call last):
  
File "/home/nitin/anaconda3/envs/ete3/bin/ete3_apps/bin/pmodeltest.py", line 582, in <module>
    main()
  
File "/home/nitin/anaconda3/envs/ete3/bin/ete3_apps/bin/pmodeltest.py", line 64, in main
    job_list = parse_jobs(job_list, opts.algt)
  
File "/home/nitin/anaconda3/envs/ete3/bin/ete3_apps/bin/pmodeltest.py", line 181, in parse_jobs
    numspe, lnl, dic = parse_stats(fname)
  
File "/home/nitin/anaconda3/envs/ete3/bin/ete3_apps/bin/pmodeltest.py", line 364, in parse_stats
    raise ValueError("Error parsing Phyml result %s" %path)

ValueError: Error parsing Phyml result /media/nitin/toshiba_hdd/Work/Phd/Chapter_4/data/test1_results/input/5402a3c764d1d210bed8c3000dd6673b.201_phyml_stats_JTT+I.txt

How do I fix this error?

Thank you so much!


Trying to resolve the parsing error.

Ete3 build - ValueError: Error parsing Phyml result

0 Answers0