I am new to rust. I want to write a function which later can be imported into Python as a module using the pyo3 crate.
Below is the Python implementation of the function I want to implement in Rust:
def pcompare(a, b):
letters = []
for i, letter in enumerate(a):
if letter != b[i]:
letters.append(f'{letter}{i + 1}{b[i]}')
return letters
The first Rust implemention I wrote looks like this:
use pyo3::prelude::*;
#[pyfunction]
fn compare_strings_to_vec(a: &str, b: &str) -> PyResult<Vec<String>> {
if a.len() != b.len() {
panic!(
"Reads are not the same length!
First string is length {} and second string is length {}.",
a.len(), b.len());
}
let a_vec: Vec<char> = a.chars().collect();
let b_vec: Vec<char> = b.chars().collect();
let mut mismatched_chars = Vec::new();
for (mut index,(i,j)) in a_vec.iter().zip(b_vec.iter()).enumerate() {
if i != j {
index += 1;
let mutation = format!("{i}{index}{j}");
mismatched_chars.push(mutation);
}
}
Ok(mismatched_chars)
}
#[pymodule]
fn compare_strings(_py: Python<'_>, m: &PyModule) -> PyResult<()> {
m.add_function(wrap_pyfunction!(compare_strings_to_vec, m)?)?;
Ok(())
}
Which I builded in --release mode. The module could be imported to Python, but the performance was quite similar to the performance of the Python implementation.
My first question is: Why is the Python and Rust function similar in speed?
Now I am working on a parallelization implementation in Rust. When just printing the result variable, the function works:
use rayon::prelude::*;
fn main() {
let a: Vec<char> = String::from("aaaa").chars().collect();
let b: Vec<char> = String::from("aaab").chars().collect();
let length = a.len();
let index: Vec<_> = (1..=length).collect();
let mut mismatched_chars: Vec<String> = Vec::new();
(a, index, b).into_par_iter().for_each(|(x, i, y)| {
if x != y {
let mutation = format!("{}{}{}", x, i, y).to_string();
println!("{mutation}");
//mismatched_chars.push(mutation);
}
});
}
However, when I try to push the mutation variable to the mismatched_charsvector:
use rayon::prelude::*;
fn main() {
let a: Vec<char> = String::from("aaaa").chars().collect();
let b: Vec<char> = String::from("aaab").chars().collect();
let length = a.len();
let index: Vec<_> = (1..=length).collect();
let mut mismatched_chars: Vec<String> = Vec::new();
(a, index, b).into_par_iter().for_each(|(x, i, y)| {
if x != y {
let mutation = format!("{}{}{}", x, i, y).to_string();
//println!("{mutation}");
mismatched_chars.push(mutation);
}
});
}
I get the following error:
error[E0596]: cannot borrow `mismatched_chars` as mutable, as it is a captured variable in a `Fn` closure
--> src/main.rs:16:13
|
16 | mismatched_chars.push(mutation);
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ cannot borrow as mutable
For more information about this error, try `rustc --explain E0596`.
error: could not compile `testing_compare_strings` due to previous error
I tried A LOT of different things. When I do:
use rayon::prelude::*;
fn main() {
let a: Vec<char> = String::from("aaaa").chars().collect();
let b: Vec<char> = String::from("aaab").chars().collect();
let length = a.len();
let index: Vec<_> = (1..=length).collect();
let mut mismatched_chars: Vec<&str> = Vec::new();
(a, index, b).into_par_iter().for_each(|(x, i, y)| {
if x != y {
let mutation = format!("{}{}{}", x, i, y).to_string();
mismatched_chars.push(&mutation);
}
});
}
The error becomes:
error[E0596]: cannot borrow `mismatched_chars` as mutable, as it is a captured variable in a `Fn` closure
--> src/main.rs:16:13
|
16 | mismatched_chars.push(&mutation);
| ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ cannot borrow as mutable
error[E0597]: `mutation` does not live long enough
--> src/main.rs:16:35
|
10 | let mut mismatched_chars: Vec<&str> = Vec::new();
| -------------------- lifetime `'1` appears in the type of `mismatched_chars`
...
16 | mismatched_chars.push(&mutation);
| ----------------------^^^^^^^^^-
| | |
| | borrowed value does not live long enough
| argument requires that `mutation` is borrowed for `'1`
17 | }
| - `mutation` dropped here while still borrowed
I suspect that the solution is quite simple, but I cannot see it myself.
