I have installed the package and miniconda as per instructions but I keep on getting this error the error "Executable C:/PROGRA~1/R/R-42~1.0\bin\Rscript not found". I can use Rscript normally in the terminal.
Version information
pre-commit version: 2.19.0
git --version: git version 2.36.1.windows.1
sys.version:
3.8.13 | packaged by conda-forge | (default, Mar 25 2022, 05:59:00) [MSC v.1929 64 bit (AMD64)]
sys.executable: C:\Users\pinto\AppData\Local\r-miniconda\envs\r-precommit\python.exe
os.name: nt
sys.platform: win32
Error information
An unexpected error has occurred: CalledProcessError: command: ('C:/PROGRA~1/R/R-42~1.0\\bin\\Rscript', '--vanilla', '-e', ' options(install.packages.compile.from.source = "never")\n prefix_dir <- \'C:\\\\Users\\\\pinto\\\\.cache\\\\pre-commit\\\\repom0jg06ie\'\n options(\n repos = c(CRAN = "https://cran.rstudio.com"),\n renv.consent = TRUE\n )\n source("renv/activate.R")\n renv::restore()\n activate_statement <- paste0(\n \'suppressWarnings({\',\n \'old <- setwd("\', getwd(), \'"); \',\n \'source("renv/activate.R"); \',\n \'setwd(old); \',\n \'renv::load("\', getwd(), \'");})\'\n )\n writeLines(activate_statement, \'activate.R\')\n is_package <- tryCatch(\n {\n path_desc <- file.path(prefix_dir, \'DESCRIPTION\')\n suppressWarnings(desc <- read.dcf(path_desc))\n "Package" %in% colnames(desc)\n },\n error = function(...) FALSE\n )\n if (is_package) {\n renv::install(prefix_dir)\n }\n \n ')
return code: 1
expected return code: 0
stdout:
Executable `C:/PROGRA~1/R/R-42~1.0\bin\Rscript` not found
stderr: (none)
Traceback (most recent call last):
File "C:\Users\pinto\AppData\Local\r-miniconda\envs\r-precommit\lib\site-packages\pre_commit\error_handler.py", line 73, in error_handler
yield
File "C:\Users\pinto\AppData\Local\r-miniconda\envs\r-precommit\lib\site-packages\pre_commit\main.py", line 361, in main
return hook_impl(
File "C:\Users\pinto\AppData\Local\r-miniconda\envs\r-precommit\lib\site-packages\pre_commit\commands\hook_impl.py", line 238, in hook_impl
return retv | run(config, store, ns)
File "C:\Users\pinto\AppData\Local\r-miniconda\envs\r-precommit\lib\site-packages\pre_commit\commands\run.py", line 414, in run
install_hook_envs(to_install, store)
File "C:\Users\pinto\AppData\Local\r-miniconda\envs\r-precommit\lib\site-packages\pre_commit\repository.py", line 223, in install_hook_envs
_hook_install(hook)
File "C:\Users\pinto\AppData\Local\r-miniconda\envs\r-precommit\lib\site-packages\pre_commit\repository.py", line 79, in _hook_install
lang.install_environment(
File "C:\Users\pinto\AppData\Local\r-miniconda\envs\r-precommit\lib\site-packages\pre_commit\languages\r.py", line 139, in install_environment
cmd_output_b(
File "C:\Users\pinto\AppData\Local\r-miniconda\envs\r-precommit\lib\site-packages\pre_commit\util.py", line 146, in cmd_output_b
raise CalledProcessError(returncode, cmd, retcode, stdout_b, stderr_b)
pre_commit.util.CalledProcessError: command: ('C:/PROGRA~1/R/R-42~1.0\\bin\\Rscript', '--vanilla', '-e', ' options(install.packages.compile.from.source = "never")\n prefix_dir <- \'C:\\\\Users\\\\pinto\\\\.cache\\\\pre-commit\\\\repom0jg06ie\'\n options(\n repos = c(CRAN = "https://cran.rstudio.com"),\n renv.consent = TRUE\n )\n source("renv/activate.R")\n renv::restore()\n activate_statement <- paste0(\n \'suppressWarnings({\',\n \'old <- setwd("\', getwd(), \'"); \',\n \'source("renv/activate.R"); \',\n \'setwd(old); \',\n \'renv::load("\', getwd(), \'");})\'\n )\n writeLines(activate_statement, \'activate.R\')\n is_package <- tryCatch(\n {\n path_desc <- file.path(prefix_dir, \'DESCRIPTION\')\n suppressWarnings(desc <- read.dcf(path_desc))\n "Package" %in% colnames(desc)\n },\n error = function(...) FALSE\n )\n if (is_package) {\n renv::install(prefix_dir)\n }\n \n ')
return code: 1
expected return code: 0
stdout:
Executable `C:/PROGRA~1/R/R-42~1.0\bin\Rscript` not found
stderr: (none)
sessionInfo()
#> R version 4.2.0 (2022-04-22 ucrt)
#> Platform: x86_64-w64-mingw32/x64 (64-bit)
#> Running under: Windows 10 x64 (build 19042)
#>
#> Matrix products: default
#>
#> locale:
#> [1] LC_COLLATE=en_GB.utf8 LC_CTYPE=en_GB.utf8 LC_MONETARY=en_GB.utf8
#> [4] LC_NUMERIC=C LC_TIME=en_GB.utf8
#>
#> attached base packages:
#> [1] stats graphics grDevices utils datasets methods base
#>
#> loaded via a namespace (and not attached):
#> [1] rstudioapi_0.13 knitr_1.39 magrittr_2.0.3 R.cache_0.15.0
#> [5] rlang_1.0.2 fastmap_1.1.0 fansi_1.0.3 stringr_1.4.0
#> [9] styler_1.7.0 highr_0.9 tools_4.2.0 xfun_0.31
#> [13] R.oo_1.24.0 utf8_1.2.2 cli_3.3.0 withr_2.5.0
#> [17] htmltools_0.5.2 ellipsis_0.3.2 yaml_2.3.5 digest_0.6.29
#> [21] tibble_3.1.7 lifecycle_1.0.1 crayon_1.5.1 purrr_0.3.4
#> [25] R.utils_2.11.0 vctrs_0.4.1 fs_1.5.2 glue_1.6.2
#> [29] evaluate_0.15 rmarkdown_2.14 reprex_2.0.1 stringi_1.7.6
#> [33] compiler_4.2.0 pillar_1.7.0 R.methodsS3_1.8.1 pkgconfig_2.0.3
