I have problems regarding the configuration and installation phase of openmpi starting from the command:
spack install hdf5
for the installation of spack.
Keep getting the following output:
[...]
No patches needed for openmpi
==> openmpi: Executing phase: 'autoreconf'
==> openmpi: Executing phase: 'configure'
==> Error: ProcessError: Command exited with status 1:
'/var/folders/8_/wztdc3v56hg9j4qj_fv9b6vm0000gp/T/lorenzomarta/spack-stage/spack-stage-openmpi-4.1.2-dt7kysg3arqzxcey3isivwhq2gjrpwiq/spack-src/configure' '--prefix=/Users/lorenzomarta/spack/opt/spack/darwin-monterey-m1/apple-clang-13.0.0/openmpi-4.1.2-dt7kysg3arqzxcey3isivwhq2gjrpwiq' '--enable-shared' '--disable-silent-rules' '--disable-builtin-atomics' '--enable-static' '--without-pmi' '--with-zlib=/Users/lorenzomarta/spack/opt/spack/darwin-monterey-m1/apple-clang-13.0.0/zlib-1.2.11-geghxlnypciim4i5a3v2kk6xlnt7coym' '--enable-mpi1-compatibility' '--without-psm' '--without-mxm' '--without-ucx' '--without-xpmem' '--without-fca' '--without-knem' '--without-psm2' '--without-cma' '--without-verbs' '--without-ofi' '--without-hcoll' '--without-cray-xpmem' '--without-tm' '--without-loadleveler' '--without-alps' '--without-lsf' '--without-sge' '--without-slurm' '--disable-memchecker' '--with-libevent=/Users/lorenzomarta/spack/opt/spack/darwin-monterey-m1/apple-clang-13.0.0/libevent-2.1.12-73xjwogw6nqpuldlylbmoigwmr226opr' '--with-hwloc=/Users/lorenzomarta/spack/opt/spack/darwin-monterey-m1/apple-clang-13.0.0/hwloc-2.7.0-ozodgqskus55yycodml6yamfm3zlp7bp' '--disable-java' '--disable-mpi-java' '--with-gpfs=no' '--without-cuda' '--enable-wrapper-rpath' '--disable-wrapper-runpath' '--disable-mpi-cxx' '--disable-cxx-exceptions'
2 errors found in build log:
358 checking the name lister (/usr/bin/nm -B) interface... BSD nm
359 checking for fgrep... /usr/bin/grep -F
360 checking if .proc/endp is needed... no
361 checking directive for setting text section... .text
362 checking directive for exporting symbols... .globl
363 checking for objdump... objdump
>> 364 checking if .note.GNU-stack is needed... /Library/Developer/CommandLineTools/usr/bin/objdump: error: 'conftest.o': Invalid/
Unsupported object file format
365 no
366 checking suffix for labels... :
367 checking prefix for global symbol labels... _
368 checking prefix for lsym labels... L
369 checking prefix for function in .type...
370 checking if .size is needed... no
...
386 * execute. Note that this is likely not a problem with Open MPI,
387 * but a problem with the local compiler installation. More
388 * information (including exactly what command was given to the
389 * compiler and what error resulted when the command was executed) is
390 * available in the config.log file in the Open MPI build directory.
391 **********************************************************************
>> 392 configure: error: Could not run a simple Fortran program. Aborting.
See build log for details:
/var/folders/8_/wztdc3v56hg9j4qj_fv9b6vm0000gp/T/lorenzomarta/spack-stage/spack-stage-openmpi-4.1.2-dt7kysg3arqzxcey3isivwhq2gjrpwiq/spack-build-out.txt
==> Warning: Skipping build of hdf5-1.12.1-76nex7zsw662gm5rjdkxmnspagvnzjrd since openmpi-4.1.2-dt7kysg3arqzxcey3isivwhq2gjrpwiq failed
==> Error: hdf5-1.12.1-76nex7zsw662gm5rjdkxmnspagvnzjrd: Package was not installed
==> Error: Installation request failed. Refer to reported errors for failing package(s).
(base) Mac:~ lorenzomarta$ spack install -v openmpi@4.0.0 %gcc@5.5
==> Error: No compilers with spec gcc@5.5 found
Run 'spack compiler find' to add compilers or 'spack compilers' to see which compilers are already recognized by spack.
(base) Mac:~ lorenzomarta$ spack install -v openmpi@4.0.0 %gcc@5.5
==> Error: No compilers with spec gcc@5.5 found
Run 'spack compiler find' to add compilers or 'spack compilers' to see which compilers are already recognized by spack.
(I'm working with mac with m1 processor)
From the spack compilers I get this output:
spack compilers
==> Available compilers
-- apple-clang monterey-aarch64 ---------------------------------
apple-clang@13.0.0
-- clang monterey-aarch64 ---------------------------------------
clang@6.0.0
My goal is actually to install FEniCS (DOLFINx) and from what I found online I saw that to do this you first need to install spack and so I tried. Among the various packages I was installing I found the problem indicated in openmpi. I don't know how to proceed if I need to download something else or get around the problem with another procedure.
