I am using MobaXterm to install OpenMalaria, as described in the following instructions: https://github.com/SwissTPH/openmalaria/wiki/UserGuide
I seem to be having problems with directories and install destinations on all fronts. I notice the destination path apparently already exists (perhaps because I've run git clone
before). I don't know if this is related to the error I receive that prevents me from compiling the latest version.
10/02/2022 21:51.03 /home/mobaxterm git clone https://github.com/swisstph/openmalaria.git
fatal: destination path 'openmalaria' already exists and is not an empty directory.
✘
10/02/2022 21:51.21 /home/mobaxterm cd C:/Users/User/Downloads/openmalaria-main
✔
10/02/2022 21:51.49 /drives/c/Users/User/Downloads/openmalaria-main ./build.sh
Cloning...
./build.sh: line 81: [: rev-parse: binary operator expected
Cloning into 'openmalaria'...
fatal: Remote branch master not found in upstream origin
I've also tried running the executable in openMalaria-windows.zip from the latest releases (https://github.com/SwissTPH/openmalaria/releases) without success. This opens Windows command line, the following appears, and then the program closes again:
Error: Error: unable to open scenario.xml
In: scenario.xml
OpenMalaria: No such file or directory
I've run OpenMalaria.exe from MobaXterm with the same result.
How can I install and use OpenMalaria?