0

I am trying to work on a linux based external server. I need to install Homebrew and anaconda. So, I have installed anaconda as usual in my home directory. But when I tried to install homebrew, I get the following errors:

fatal: packfile .git/objects/pack/pack-9d2d97f367d3ebfa65a3b708b2d87333a8eb2bf0.pack cannot be mapped: Cannot allocate memory

error: https://github.com/Homebrew/homebrew-core did not send all necessary objects

Failed during: git fetch --force origin refs/heads/master:refs/remotes/origin/master

Ok, then I tried to install git using conda. However, I have encountered another error, which is:

libgcc_s.so.1 must be installed for pthread_cancel to work

I tried to install the GCC library using this link How do I compile and run GCC 4.9.x?

But then again, I encountered the problem of "cannot allocate memory". As I am working on an external cluster with many CPUs, I assume I have enough memory and space because I am working with many genomes.

Also, I cannot used sudo as I am not authorised to do that. I also tried to get the apt-get command but it shows that apt-get command not found. Can anybody please help me to solve these problems? Thank you.

Anik Dutta
  • 29
  • 6
  • "cannot allocate memory" means that you *don't* have enough memory. What we don't know is how much "enough" would be: are these things trying to allocate 500 kilobytes, 500 megabytes, or 500 gigabytes? Find out how much they want, and see if you can get your VM expanded as necessary. – torek Jan 02 '22 at 16:39
  • Ok, I will check that. – Anik Dutta Jan 02 '22 at 17:28

0 Answers0