Have you tried calling fetch before skip and take
var result = _repostitory.All<MediaFile>()
.Fetch(mf => mf.Tags)
.Skip(10)
.Take(10);
From what I remember NH cannot handle join eager loading with limits on the query (it has to do with SQL and not NH). It might work with sub select though.
**UPDATE
Consider this example
TableA
-------------
Id|Value
-------------
1 |Value1
2 |Value2
3 |Value3
TableB
-------------------------
ChildId|ParentId|ChildValue
-------------------------
1 | 1|Value1
2 | 1|Value2
3 | 2|Value3
4 | 2|Value4
5 | 3|Value5
6 | 3|ValueA
7 | 3|ValueA
8 | 3|ValueA
SELECT * FROM TableA LEFT JOIN TableB ON TableA.Id = TableB.ParentId
Result
--------------------------------------
Id|Value |ChildId|ParentId|ChildValue
--------------------------------------
1 |Value1|1 | 1|Value1
1 |Value1|2 | 1|Value2
2 |Value1|3 | 2|Value3
2 |Value1|4 | 2|Value4
3 |Value1|5 | 3|Value5
3 |Value1|6 | 3|ValueA
3 |Value1|7 | 3|ValueA
3 |Value1|8 | 3|ValueA
SELECT TOP 2 * FROM TableA LEFT JOIN TableB ON TableA.Id = TableB.ParentId
Result
--------------------------------------
Id|Value |ChildId|ParentId|ChildValue
--------------------------------------
1 |Value1|1 | 1|Value1
1 |Value1|2 | 1|Value2
Therefore the .Take(2) will return one object with two children (Id 1). Where you would want to return the first two objects (Id 1,2) with their children.