If you are concerned about two enterprise app influencing performance of each other you shall consider moving them into two separate VMs.
GC is optimised and running in it's own thread(s). It is designed to be invisible for the current application. So on a multiprocessor enterprise server, a separate process shall not be damaged at all.
From the other point, server is still getting some load from GC. If you feel that GC somehow slows down your applications, you might probably perform some memory and CPU profiling to see where is a problem. You may find a way to optimize code and use less resources.
From J.Richter "CLR via C# v3" p.585
This mode fine-tunes the garbage collector for server-side
applications. The garbage collector assumes that no other applications
(client or server) are running on the machine and it assumes that all
the CPUs on the machine are available to do a garbage collection. This
GC mode causes the managed heap to be split into several sections, one
per CPU. When a garbage collection is initiated, the garbage collector
has one thread per CPU; each thread collects its own section in
parallel with the other threads. Parallel collections work well for
server applications in which the worker threads tend to exhibit
uniform behavior. This feature requires the application to be running
on a computer with multiple CPUs so that the threads can truly be
working simultaneously to attain a performance improvement.