This is hard to answer without any code provided by you. You should probably look at the examples here: http://peterscarfe.com/ptbtutorials.html
I'm still going to try to answer, but again, without code from you, this might or might not be helpful.
In psychtoolbox you draw stimuli first off screen and then you 'Flip' what has been drawn off screen to be displayed on the monitor. First you set up the display window like this:
screenNumber = max(Screen('Screens'));
[w, wRect] = PsychImaging('OpenWindow', screenNumber, [0 0 0]);
Now you have a fully black monitor. If you want to show something else (here a red dot with a size of 20 pixels at the center of the screen), you have to draw it on the upcoming frame and then 'Flip', like this:
[screenXpixels, screenYpixels] = Screen('WindowSize', w);
Screen('DrawDots', w, [screenXpixels/2, screenYpixels/2], 20, [1 0 0], [], 2);
Screen('Flip', w)
Your experiments probably have loops that draw the stimuli and flip to them at the appropriate times within each trial. You will have to figure out what things from which loop to put into a combined loop, so they are drawn at the same time and then flipped together. Good luck.