I have decompiled .dex to .java using JADX . Now how do I compile back the whole program into .dex file?
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Try https://github.com/pxb1988/dex2jar
This project has dex2jar and jar2dex apps/scripts.
Also you should probably take a look at https://ibotpeaches.github.io/Apktool/ as a way to decompile and re-compile Android apps.

Mr. P
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