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In my dataset I have control and treatment groups for four plant varieties, with four replicates for each variety

Below is the format of the dataset with just two plant varieties (I have ~6000 proteins in my dataset) I need to do 2 way anova to see the differences of the treatment and variety and to get P value for each protein for treatment and variety effect. Can someone please help me to get this Anova done in R?

This link shows how my dataset looks proteomic dataset

Madhu Jayawardena
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  • Can you post data in `dput` format? Given the number of columns, subset the data with something like this: `cols <- seq_len(which(names(df) == "TreatmentVariety2_4")); dput(head(df[cols]))`. – Rui Barradas Feb 16 '21 at 06:27
  • Sorry. I'm extremely new to R. Is there any other way that I could send the dataset to you to look at and give it a try to get this 2 way Anova done? – Madhu Jayawardena Feb 17 '21 at 03:26

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