You can do it in a single test plan using:
- Module Controllers - to keep individual endpoints and their arbitrary combinations
- Switch Controller - to choose which endpoint(s) to run
- __P() function - to make the endpoint(s) selection externally configurable
Test plan outline:

So
if you run JMeter as:
jmeter -Jtarget=all
it will execute all 3 endpoints
if you run JMeter as:
jmeter -Jtarget=endpoint1
it will execute only endpoint1
etc.
If you want to trigger the test using Taurus (however I fail to see the valid use case for Taurus there) you can pass the property via -o
command-line argument like:
bzt -o modules.jmeter.properties.target=all
or
bzt -o modules.jmeter.properties.target=endpoint1
Full test plan just in case:
<?xml version="1.0" encoding="UTF-8"?>
<jmeterTestPlan version="1.2" properties="5.0" jmeter="5.3">
<hashTree>
<TestPlan guiclass="TestPlanGui" testclass="TestPlan" testname="Test Plan" enabled="true">
<stringProp name="TestPlan.comments"></stringProp>
<boolProp name="TestPlan.functional_mode">false</boolProp>
<boolProp name="TestPlan.tearDown_on_shutdown">true</boolProp>
<boolProp name="TestPlan.serialize_threadgroups">false</boolProp>
<elementProp name="TestPlan.user_defined_variables" elementType="Arguments" guiclass="ArgumentsPanel" testclass="Arguments" testname="User Defined Variables" enabled="true">
<collectionProp name="Arguments.arguments"/>
</elementProp>
<stringProp name="TestPlan.user_define_classpath"></stringProp>
</TestPlan>
<hashTree>
<ThreadGroup guiclass="ThreadGroupGui" testclass="ThreadGroup" testname="Thread Group" enabled="true">
<stringProp name="ThreadGroup.on_sample_error">continue</stringProp>
<elementProp name="ThreadGroup.main_controller" elementType="LoopController" guiclass="LoopControlPanel" testclass="LoopController" testname="Loop Controller" enabled="true">
<boolProp name="LoopController.continue_forever">false</boolProp>
<stringProp name="LoopController.loops">1</stringProp>
</elementProp>
<stringProp name="ThreadGroup.num_threads">1</stringProp>
<stringProp name="ThreadGroup.ramp_time">1</stringProp>
<boolProp name="ThreadGroup.scheduler">false</boolProp>
<stringProp name="ThreadGroup.duration"></stringProp>
<stringProp name="ThreadGroup.delay"></stringProp>
<boolProp name="ThreadGroup.same_user_on_next_iteration">true</boolProp>
</ThreadGroup>
<hashTree>
<SwitchController guiclass="SwitchControllerGui" testclass="SwitchController" testname="Switch Controller" enabled="true">
<stringProp name="SwitchController.value">${__P(target,)}</stringProp>
</SwitchController>
<hashTree>
<ModuleController guiclass="ModuleControllerGui" testclass="ModuleController" testname="all" enabled="true">
<collectionProp name="ModuleController.node_path">
<stringProp name="764597751">Test Plan</stringProp>
<stringProp name="764597751">Test Plan</stringProp>
<stringProp name="-1948168983">Thread Group</stringProp>
<stringProp name="96673">all</stringProp>
</collectionProp>
</ModuleController>
<hashTree/>
<ModuleController guiclass="ModuleControllerGui" testclass="ModuleController" testname="endpoint1" enabled="true">
<collectionProp name="ModuleController.node_path">
<stringProp name="764597751">Test Plan</stringProp>
<stringProp name="764597751">Test Plan</stringProp>
<stringProp name="-1948168983">Thread Group</stringProp>
<stringProp name="-1837756314">endpoint 1</stringProp>
</collectionProp>
</ModuleController>
<hashTree/>
<ModuleController guiclass="ModuleControllerGui" testclass="ModuleController" testname="endpoint2" enabled="true">
<collectionProp name="ModuleController.node_path">
<stringProp name="764597751">Test Plan</stringProp>
<stringProp name="764597751">Test Plan</stringProp>
<stringProp name="-1948168983">Thread Group</stringProp>
<stringProp name="-1837756313">endpoint 2</stringProp>
</collectionProp>
</ModuleController>
<hashTree/>
<ModuleController guiclass="ModuleControllerGui" testclass="ModuleController" testname="endpoint3" enabled="true">
<collectionProp name="ModuleController.node_path">
<stringProp name="764597751">Test Plan</stringProp>
<stringProp name="764597751">Test Plan</stringProp>
<stringProp name="-1948168983">Thread Group</stringProp>
<stringProp name="-1837756312">endpoint 3</stringProp>
</collectionProp>
</ModuleController>
<hashTree/>
</hashTree>
<ResultCollector guiclass="ViewResultsFullVisualizer" testclass="ResultCollector" testname="View Results Tree" enabled="true">
<boolProp name="ResultCollector.error_logging">false</boolProp>
<objProp>
<name>saveConfig</name>
<value class="SampleSaveConfiguration">
<time>true</time>
<latency>true</latency>
<timestamp>true</timestamp>
<success>true</success>
<label>true</label>
<code>true</code>
<message>true</message>
<threadName>true</threadName>
<dataType>true</dataType>
<encoding>false</encoding>
<assertions>true</assertions>
<subresults>true</subresults>
<responseData>false</responseData>
<samplerData>false</samplerData>
<xml>false</xml>
<fieldNames>true</fieldNames>
<responseHeaders>false</responseHeaders>
<requestHeaders>false</requestHeaders>
<responseDataOnError>false</responseDataOnError>
<saveAssertionResultsFailureMessage>true</saveAssertionResultsFailureMessage>
<assertionsResultsToSave>0</assertionsResultsToSave>
<bytes>true</bytes>
<sentBytes>true</sentBytes>
<url>true</url>
<threadCounts>true</threadCounts>
<idleTime>true</idleTime>
<connectTime>true</connectTime>
</value>
</objProp>
<stringProp name="filename"></stringProp>
</ResultCollector>
<hashTree/>
<TestFragmentController guiclass="TestFragmentControllerGui" testclass="TestFragmentController" testname="all" enabled="false"/>
<hashTree>
<ModuleController guiclass="ModuleControllerGui" testclass="ModuleController" testname="Module Controller - endpoint 1" enabled="true">
<collectionProp name="ModuleController.node_path">
<stringProp name="764597751">Test Plan</stringProp>
<stringProp name="764597751">Test Plan</stringProp>
<stringProp name="-1948168983">Thread Group</stringProp>
<stringProp name="-1481272069">Test Fragment - endpoint 1</stringProp>
</collectionProp>
</ModuleController>
<hashTree/>
<ModuleController guiclass="ModuleControllerGui" testclass="ModuleController" testname="Module Controller - endpoint 2" enabled="true">
<collectionProp name="ModuleController.node_path">
<stringProp name="764597751">Test Plan</stringProp>
<stringProp name="764597751">Test Plan</stringProp>
<stringProp name="-1948168983">Thread Group</stringProp>
<stringProp name="-1481272068">Test Fragment - endpoint 2</stringProp>
</collectionProp>
</ModuleController>
<hashTree/>
<ModuleController guiclass="ModuleControllerGui" testclass="ModuleController" testname="Module Controller - endpoint 3" enabled="true">
<collectionProp name="ModuleController.node_path">
<stringProp name="764597751">Test Plan</stringProp>
<stringProp name="764597751">Test Plan</stringProp>
<stringProp name="-1948168983">Thread Group</stringProp>
<stringProp name="-1481272067">Test Fragment - endpoint 3</stringProp>
</collectionProp>
</ModuleController>
<hashTree/>
</hashTree>
<TestFragmentController guiclass="TestFragmentControllerGui" testclass="TestFragmentController" testname="endpoint 1" enabled="false"/>
<hashTree>
<kg.apc.jmeter.samplers.DummySampler guiclass="kg.apc.jmeter.samplers.DummySamplerGui" testclass="kg.apc.jmeter.samplers.DummySampler" testname="endpoint1" enabled="true">
<boolProp name="WAITING">true</boolProp>
<boolProp name="SUCCESFULL">true</boolProp>
<stringProp name="RESPONSE_CODE">200</stringProp>
<stringProp name="RESPONSE_MESSAGE">OK</stringProp>
<stringProp name="REQUEST_DATA">Dummy Sampler used to simulate requests and responses
without actual network activity. This helps debugging tests.</stringProp>
<stringProp name="RESPONSE_DATA">Dummy Sampler used to simulate requests and responses
without actual network activity. This helps debugging tests.</stringProp>
<stringProp name="RESPONSE_TIME">${__Random(50,500)}</stringProp>
<stringProp name="LATENCY">${__Random(1,50)}</stringProp>
<stringProp name="CONNECT">${__Random(1,5)}</stringProp>
<stringProp name="URL"></stringProp>
<stringProp name="RESULT_CLASS">org.apache.jmeter.samplers.SampleResult</stringProp>
</kg.apc.jmeter.samplers.DummySampler>
<hashTree/>
</hashTree>
<TestFragmentController guiclass="TestFragmentControllerGui" testclass="TestFragmentController" testname="endpoint 2" enabled="false"/>
<hashTree>
<kg.apc.jmeter.samplers.DummySampler guiclass="kg.apc.jmeter.samplers.DummySamplerGui" testclass="kg.apc.jmeter.samplers.DummySampler" testname="endpoint2" enabled="true">
<boolProp name="WAITING">true</boolProp>
<boolProp name="SUCCESFULL">true</boolProp>
<stringProp name="RESPONSE_CODE">200</stringProp>
<stringProp name="RESPONSE_MESSAGE">OK</stringProp>
<stringProp name="REQUEST_DATA">Dummy Sampler used to simulate requests and responses
without actual network activity. This helps debugging tests.</stringProp>
<stringProp name="RESPONSE_DATA">Dummy Sampler used to simulate requests and responses
without actual network activity. This helps debugging tests.</stringProp>
<stringProp name="RESPONSE_TIME">${__Random(50,500)}</stringProp>
<stringProp name="LATENCY">${__Random(1,50)}</stringProp>
<stringProp name="CONNECT">${__Random(1,5)}</stringProp>
<stringProp name="URL"></stringProp>
<stringProp name="RESULT_CLASS">org.apache.jmeter.samplers.SampleResult</stringProp>
</kg.apc.jmeter.samplers.DummySampler>
<hashTree/>
</hashTree>
<TestFragmentController guiclass="TestFragmentControllerGui" testclass="TestFragmentController" testname="endpoint 3" enabled="false"/>
<hashTree>
<kg.apc.jmeter.samplers.DummySampler guiclass="kg.apc.jmeter.samplers.DummySamplerGui" testclass="kg.apc.jmeter.samplers.DummySampler" testname="endpoint3" enabled="true">
<boolProp name="WAITING">true</boolProp>
<boolProp name="SUCCESFULL">true</boolProp>
<stringProp name="RESPONSE_CODE">200</stringProp>
<stringProp name="RESPONSE_MESSAGE">OK</stringProp>
<stringProp name="REQUEST_DATA">Dummy Sampler used to simulate requests and responses
without actual network activity. This helps debugging tests.</stringProp>
<stringProp name="RESPONSE_DATA">Dummy Sampler used to simulate requests and responses
without actual network activity. This helps debugging tests.</stringProp>
<stringProp name="RESPONSE_TIME">${__Random(50,500)}</stringProp>
<stringProp name="LATENCY">${__Random(1,50)}</stringProp>
<stringProp name="CONNECT">${__Random(1,5)}</stringProp>
<stringProp name="URL"></stringProp>
<stringProp name="RESULT_CLASS">org.apache.jmeter.samplers.SampleResult</stringProp>
</kg.apc.jmeter.samplers.DummySampler>
<hashTree/>
</hashTree>
</hashTree>
</hashTree>
</hashTree>
</jmeterTestPlan>