I am a beginner with Singularity.
What I want to achieve in the long run: I have a programming project with a long lists of dependencies, and I want to be able to give the program to other people in my company without there being bugs caused by missing dependencies, or wrong versions of dependencies.
The idea was now to use Singularity in order to easily provide a working environment.
In order to test this, I wrote a Hello World application which I now want to run in a container. I have a folder HelloWorld/
which contains the source code for a C++ Qt project. Then I wrote the following recipe file:
project.recipe
Bootstrap: docker
From: ubuntu:18.04
%setup
cp -R <some_folder>/HelloWorld ${SINGULARITY_ROOTFS}/HelloWorld
%post
apt update
apt-get install -y qt5-default
apt install -y g++
apt-get install -y build-essential
cd HelloWorld
qmake
make
echo "after build:"
ls
%runscript
echo "before execution:"
ls HelloWorld/
./HelloWorld/HelloWorld
where the echos and directory listings are for my current debugging process.
I can sucessfully build an image file using sudo singularity build --writable project.img project.recipe
. (My debugging output shows me that the executable was build successfully.)
The problem is now that if I try to run it using ./project.img
, or singularity run project.img
, it won't find the executable.
Using my debugging output, I found out that the lines in %runscript
use the folders outside of the container.
Tutorials like https://sylabs.io/guides/3.1/user-guide/build_a_container.html made it seem to me as if my recipe was the way to go, but apparently it isn't?
My questions:
- Is there some way for me to access my executable? Am I calling it wrong?
- Is the way I do it the way it is supposed to be done? Or would one normally do something like getting the executable outside of the container and then use the container to call that outside file? Or is there a different best practice?
- If the executable is to be copied outside of the container after compilation, how do I do that? How do I access outside folders when I'm within
%post
? - Is this the best work process for what I want to achieve? Later on, my idea is that the big project is copied likewise in the container, dependencies are either installed or copied, then the project is compiled and finally its source being deleted. I also considered using a repository, but I can't have the project being in an open repository, and I don't want to store any passwords.