I'm developing a shiny app that help users to install Bioconductor packages not installed in their machines.
Following this post regarding printing out r console in a shiny app, I'm trying to print out all the messages you regularly get when you install a new package in a R console.
An example would be like this:
library(shiny)
library(shinyjs)
library(BiocManager)
names <- c("shinythemes")
foo <- function() {
BiocManager::install(names, update=FALSE)
}
runApp(shinyApp(
ui = fluidPage(
shinyjs::useShinyjs(),
actionButton("btn","Click me"),
textOutput("text")
),
server = function(input,output, session) {
observeEvent(input$btn, {
withCallingHandlers({
shinyjs::html("text", "")
foo()
},
message = function(m) {
shinyjs::html(id = "text", html = m$message, add = TRUE)
})
})
}
))
What I get in the shiny app is just one line:
Bioconductor version 3.12 (BiocManager 1.30.10), R 4.0.2 (2020-06-22) Installing package(s) 'shinythemes'
while I want to get all the lines printet out in r console (eg:
Thanks for your time