Adjust Threshold Within Macro ImageJ

Asked May 21 '20 at 16:06

Active May 21 '20 at 16:06

Viewed 1,279 times

I'm looking to write a macro which requires user input to segment kidneys through thresholding. I'm currently running this:

selectWindow("Cortex");
//run("Threshold...");
title = "WaitForUserDemo";
msg = "If necessary, use the \"Threshold\" tool to\nadjust the threshold, then click \"OK\".";
waitForUser(title, msg);

While the thresholding colour appears, there is no option here to adjust the threshold as the user. Does anyone know how I can get the user to be able to adjust the threshold without having to click "Image -> Adjust - > threshold" each time?

Thanks!

asked May 21 '20 at 16:06

George Bruce

1

If I run your code with the line `run("Threshold...");` uncommented, it works as you expect. The Threshold window appears for user adjustment. This is running latest Fiji/ImageJ1.52p. – quantixed May 21 '20 at 18:37
Works like a charm! thank you – George Bruce May 21 '20 at 19:15

Adjust Threshold Within Macro ImageJ

0 Answers0