0

Melting phyloseq data for easier plotting takes long time with df = psmelt(pseq) so I want to save the created df data.frame to disc for faster recovering in case of any crash. Using save(df,file="filename.Rda") creates file which is supposed to be reloaded by df = load("finename.Rda").

str(df) returns 'data.frame': 1294700 obs. of 23 variables:...

after df = load("filename.Rda") the df appears in "values" not "data" and is quite small.

How to properly load the saved data preserving its structure, etc.???

Best regards, Marcin

mschmidt
  • 89
  • 7

1 Answers1

0

I figured it out, it should be simply load(filename.Rda) , no df =, and it goes where it should be and as it supposed to be.

mschmidt
  • 89
  • 7