I'm developing a snakemake pipeline to QC a large set of data. I'd like to generate a set of plots for each dataset and then generate a html report that combines the plots with some text. Looking at https://snakemake.readthedocs.io/en/stable/snakefiles/reporting.html, this will only generate one report for the whole pipeline. Is there a way to do this per dataset?
The functionality to do this is still available via the old way of generating reports with report(), but this is now deprecated. Wondering if there is a recommended way to achieve something like the below with the newer report functionality.
from snakemake.utils import report
rule createreport:
input:
plot1 = "results/{dataset}/plot1.pdf",
output:
report = "reports/{dataset}.html"
run:
report("""
This plot shows etc...
plot1_
""", output.report, **input)
