Zeckendorf and Golden Ratio Base are clearly closely related, but still it seems tricky to convert from one to the other. I know that there is work by Frougny and Sakarovitch on this, but I haven't fully understood this. One problem is that Golden Ratio Base representations are rather symmetrical around the radix point, which suggests that these representations may be context free. Sakarovitch and Frougny deal with this by using "folded" Golden Ratio Base numbers. With this modified representation they can supposedly do the conversion with a finite state transducer, but I didn't grasp how this should work.
As for the partial symmetry of Golden ratio base, this has to do with roots coming in pairs (there's a longer explanation that I have of this from George Bergman (pc)).
One thing I do know about the relation between these two representations is that for every Golden Ratio base representation of the form d-1...d_i*d_j...d_n (using '*' as radix point), there is a corresponding equation involving Fibonacci numbers:
Example 4 = 101.01 <=> 4f_n = f_{n+2} + f_n + f_{n-2} (with f_0 = f_1 = 1
and f_n = f_{n-1} + f_{n-2})
For n=3, f_n=3: 12 = 10101
for n=4, f_n=5: 20 = 101010
for n=5 f_n=8: 32 = 1010100
(Etc. There is a whole series of numbers that all have the same Zeckendorf bit pattern as Golden Ratio base representation for 4). This sure looks like it ought to be helpful, but how?
This pattern is discussed in D. Gerdemann, Combinatorial proofs of Zeckendorf family identities Fibonacci Quarterly, 2008/2009.
BTW: Despite having a paper in the Fibonacci Quarterly, I'm strictly an amateur in this area. There are a lot of gaps in my knowledge, including the gap I am asking about.