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After running the .ipynb in pycharm and clicking cancel on the popup that says Please, enter your Jupyter Notebook URL and authentication token -> Clicking Run Jupyter Notebook next to Cannot connect to Jupyter Notebook and copying and pasting the url under To access the notebook, open this file in a browser:.... Or copy and paste one of these URLs:

I followed these instructions to run the python set up in my virtual machine.

After this, and after installing all modules including Scipy I am receiving this error when training Keras module

ImportError: No module named scipy

The module is installed though.

After 

pip install --upgrade --force-reinstall scipy
Sam
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1 Answers1

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After trying to force reinstall scipy

pip install --upgrade --force-reinstall scipy

I noticed that there were a few python files that were being read from the wrong path.

The solution involved closing Pycharm, and reopening it. Then when running the .ipynb file again, I had to set Python interpreter and Project to the correct ones. (untitled is the name of the project, and Python 3.6 (untitled) is the name of the venv)

Project was previously set to username and Python Interpreter was previously set to the python /user/bin/python.

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Project was previously set to username(the home directory) and Python Interpreter was previously set to the python in /user/bin/python. Because the Project was set to username, I believe some of the scipy files were being read from the home directory. I don't know why this was the case though.

Sam
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