I have a Jekyll blog at GitHub, and there are problems caused by an old version of the Rouge syntax highlighter. The issue can be seen in this post here1, for example. Note the red equals signs.
If I serve my site locally, I get the latest version of Rouge and I don't see those red equals signs (actually, I wrote the patch to fix that bug and my patch was released in Rouge 3.3.0). So that's how I know the dependencies are out of date on the GitHub side.
I have found loads of posts about how to update dependencies locally, but how can I update them in GitHub?
1 Thanks to an answer that was subsequently deleted, I was able to fix the red highlighting by using the JS syntax highlighter.