There is configuration parameter of port number on "postgresql.conf" file.
See the directory "$AGDATA", you can found "postgresql.conf" file.
$ grep ^#port $AGDATA/postgresql.conf
#port = 5432 # (change requires restart)
$ vi $AGDATA/postgresql.conf
<<< FIX Port Number >>>
$ grep ^port $AGDATA/postgresql.conf
port = 9999 # (change requires restart)
After fix port number, Restart your AgensGraph.
$ ag_ctl restart
waiting for server to shut down..... done
server stopped
waiting for server to start.... done
server started
After restart, you can access to AgensGraph on new port number.
$ agens -p 9999
agens (AgensGraph 2.1.0, based on PostgreSQL 10.4)
Type "help" for help.
agens=#