I understand that each CPU/architecture has it's own instruction set, therefore a program(binary) written for a specific CPU cannot run on another. But what i don't really understand is why an executable file (binary like .exe for instance) cannot run on Linux but can run on windows even on the very same machine.
This is a basic question, and the answer i'm expecting is that .exe and other binary formats are probably not Raw machine instructions but they contain some data that is operating system dependent. If this is true, then what this OS dependent data is like? and as an example what is the format of an .exe file and the difference between it and Linux executables?
Is there a source i can get brief and detailed information about this?