Read fixed width file using schema from json file in pyspark

Question

I have fixed width file as below

00120181120xyz12341
00220180203abc56792
00320181203pqr25483

And a corresponding JSON file that specifies the schema:

{"Column":"id","From":"1","To":"3"}
{"Column":"date","From":"4","To":"8"}
{"Column":"name","From":"12","To":"3"}
{"Column":"salary","From":"15","To":"5"}

I read the schema file into DataFrame using:

SchemaFile = spark.read\
    .format("json")\
    .option("header","true")\
    .json('C:\Temp\schemaFile\schema.json')

SchemaFile.show()
#+------+----+---+
#|Column|From| To|
#+------+----+---+
#|    id|   1|  3|
#|  date|   4|  8|
#|  name|  12|  3|
#|salary|  15|  5|
#+------+----+---+

Likewise, I am parsing the fixed width file into a pyspark DataFrame as below:

File = spark.read\
    .format("csv")\
    .option("header","false")\
    .load("C:\Temp\samplefile.txt")

File.show()
#+-------------------+
#|                _c0|
#+-------------------+
#|00120181120xyz12341|
#|00220180203abc56792|
#|00320181203pqr25483|
#+-------------------+

I can obviously hard code the values for the positions and lengths of each column to get the desired output:

from pyspark.sql.functions import substring
data = File.select(
    substring(File._c0,1,3).alias('id'),
    substring(File._c0,4,8).alias('date'),
    substring(File._c0,12,3).alias('name'),
    substring(File._c0,15,5).alias('salary')
)

data.show()
#+---+--------+----+------+
#| id|    date|name|salary|
#+---+--------+----+------+
#|001|20181120| xyz| 12341|
#|002|20180203| abc| 56792|
#|003|20181203| pqr| 25483|
#+---+--------+----+------+

But how can I use the SchemaFile DataFrame to specify the widths and column names for the lines so that the schema can be applied dynamically (without hard coding) at run time?

I want to apply schema over data while reading as run time .not hard coded — user2935539, Dec 18 '18 at 06:55

pault · Accepted Answer · 2018-12-18T17:15:43.230

The easiest thing to do here would be to collect the contents of SchemaFile and loop over its rows to extract the desired data.

First read the schema file as JSON into a DataFrame. Then call collect and map each row to a dictionary:

sfDict = map(lambda x: x.asDict(), SchemaFile.collect())
print(sfDict)
#[{'Column': u'id', 'From': u'1', 'To': u'3'},
# {'Column': u'date', 'From': u'4', 'To': u'8'},
# {'Column': u'name', 'From': u'12', 'To': u'3'},
# {'Column': u'salary', 'From': u'15', 'To': u'5'}]

Now you can loop over the rows in sfDict and use the values to substring your column:

from pyspark.sql.functions import substring
File.select(
    *[
        substring(
            str='_c0',
            pos=int(row['From']),
            len=int(row['To'])
        ).alias(row['Column']) 
        for row in sfDict
    ]
).show()
#+---+--------+----+------+
#| id|    date|name|salary|
#+---+--------+----+------+
#|001|20181120| xyz| 12341|
#|002|20180203| abc| 56792|
#|003|20181203| pqr| 25483|
#+---+--------+----+------+

Note that we have to cast To and From to integers since they are specified as strings in your json file.

Read fixed width file using schema from json file in pyspark

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