With the plotweb() function in the bipartite package in R, I've created a network, but some of the labels are too long for the plot area. As a result, they are being cut off at the top and bottom (I've included a picture).
I'm trying to make it fit in the plot, or if not possible, to be able to export it as an image without the edges being cut off.
I've tried par(mar=c(), but that doesn't seem to do anything. ybig() can allow the top half to fit in, but it doesn't change the bottom section.
It seems that the argument y.lim could be adjusted in such cases. From help(plotweb), about y.lim:
[...] Useful if labels are plotted outside the plotting region and for multitrophic plots [...]
Here is an example:
library(bipartite)
data(Safariland)
# Forge some long names/labels
cn <- colnames(Safariland)
rn <- rownames(Safariland)
colnames(Safariland) <- paste(cn, cn)
rownames(Safariland) <- paste(rn, rn)
# plotweb with trying to fit the labels - tweak y.lim until you get it right
plotweb(Safariland, text.rot = 90, y.lim = c(-1.5, 4))
