I'm trying to run the atmospheric correction for Landsat images in Google Earth Engine. In the region I'm interested loads of images are only available at TOA reflection and I'd like to approximate the surface reflection as good as possible.
I'm considering to use Sam Murphy's set up that uses Py6S available on github. I got stuck running the docker container.
I went through the following steps:
- Enable Virtual Machine
- Enable Microsoft Hyper V in powershell
- Install Docker - Docker login - test docker: open cmd as admin - run:
docker run hello-world - The Docker file (downloaded from github) is located in a folder called D:\ProjectFolder\GEE\preprocess\ee-atmcorr-timeseries-master. So after opening cmd as admin and trying to run the following code:
docker build D:\ProjectFolder\GEE\preprocess\ee-atmcorr-timeseries-master -t atmcorr-timeseries
I get an error (even after allowing Deamon to run in experimental mode):
Error:
The command '/bin/sh -c conda install -c anaconda pip && pip install earthengine-api openpyxl oauth2client' returned a non-zero code: 1
Below is the lengthy error report. I'm on a Windows 10 machine (version 1803) 64x. I had Anaconda and Python previously installed but figured this shouldn't affect the result. I'm new to docker and the interaction with google earth engine so sorry for lengthy (but perhaps still incomplete) question. I figured It had to do with incorrect calling of the locations on my drives (Anaconda/Python in C while the Model is on a D drive) but i'm not sure and haven't been able to fix it by changing the working directory (cd command in cmd).
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<
Traceback (most recent call last):
File "/miniconda/lib/python3.6/site-packages/conda/exceptions.py", line 819, in __call__
return func(*args, **kwargs)
File "/miniconda/lib/python3.6/site-packages/conda/cli/main.py", line 78, in _main
exit_code = do_call(args, p)
File "/miniconda/lib/python3.6/site-packages/conda/cli/conda_argparse.py", line 77, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "/miniconda/lib/python3.6/site-packages/conda/cli/main_install.py", line 11, in execute
install(args, parser, 'install')
File "/miniconda/lib/python3.6/site-packages/conda/cli/install.py", line 235, in install
force_reinstall=context.force,
File "/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 518, in solve_for_transaction
force_remove, force_reinstall)
File "/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 451, in solve_for_diff
final_precs = self.solve_final_state(deps_modifier, prune, ignore_pinned, force_remove)
File "/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 180, in solve_final_state
index, r = self._prepare(prepared_specs)
File "/miniconda/lib/python3.6/site-packages/conda/core/solve.py", line 592, in _prepare
self.subdirs, prepared_specs)
File "/miniconda/lib/python3.6/site-packages/conda/core/index.py", line 215, in get_reduced_index
new_records = query_all(spec)
File "/miniconda/lib/python3.6/site-packages/conda/core/index.py", line 184, in query_all
return tuple(concat(future.result() for future in as_completed(futures)))
File "/miniconda/lib/python3.6/site-packages/conda/core/subdir_data.py", line 95, in query
self.load()
File "/miniconda/lib/python3.6/site-packages/conda/core/subdir_data.py", line 149, in load
_internal_state = self._load()
File "/miniconda/lib/python3.6/site-packages/conda/core/subdir_data.py", line 246, in _load
_internal_state = self._process_raw_repodata_str(raw_repodata_str)
File "/miniconda/lib/python3.6/site-packages/conda/core/subdir_data.py", line 369, in _process_raw_repodata_str
info['fn'] = fn
TypeError: 'NoneType' object does not support item assignment
`$ /miniconda/bin/conda install -c anaconda pip`
environment variables:
CIO_TEST=<not set>
CONDA_ROOT=/miniconda
PATH=/miniconda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin
:/bin
REQUESTS_CA_BUNDLE=<not set>
SSL_CERT_FILE=<not set>
active environment : None
user config file : /root/.condarc
populated config files : /root/.condarc
conda version : 4.5.11
conda-build version : not installed
python version : 3.6.6.final.0
base environment : /miniconda (writable)
channel URLs : https://conda.anaconda.org/anaconda/linux-64
https://conda.anaconda.org/anaconda/noarch
https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/free/linux-64
https://repo.anaconda.com/pkgs/free/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
https://repo.anaconda.com/pkgs/pro/linux-64
https://repo.anaconda.com/pkgs/pro/noarch
package cache : /miniconda/pkgs
/root/.conda/pkgs
envs directories : /miniconda/envs
/root/.conda/envs
platform : linux-64
user-agent : conda/4.5.11 requests/2.20.0 CPython/3.6.6 Linux/4.14.23-linuxkit ubuntu/16.04 glibc/2.23
UID:GID : 0:0
netrc file : None
offline mode : False
An unexpected error has occurred. Conda has prepared the above report.
