'findstr' is not recognized as an internal or external command, operable program or batch file in R

Question

I recently installed PBSadmb package in R and ran the following command line.

compAD('vonb')

vonb is my file name

enter image description here

I think the compAD function requires findstr.exe inside to proceed something but gave me errors instead of working.

So I googled to solve this problem and I found the same question on this same topic (although he/she was using the different program)

question

reading the suggestions in that page, I added a new path "C:\Windows\System32" to the path in environment variables tab in System properties.

But nothing has changed.

Can anyone shed me some light on this problem?

Thank you!

Here's my code.

    ###PBSadmb user's guide! ###180910
getwd()
setwd("E:/ADMB/PBSadmb_exercise/vonb")
getwd()

#check the gcc and programs for your code!
Sys.getenv()["PATH"]
#load package
require(PBSadmb)
#set the path of the programs (admb, gcc, editor)
setupAD('NewADPaths.txt') #NewADPaths should be in the right directory!

#checkADopts()
convAD('vonb') #convert *.tpl to *.cpp
compAD('vonb') #compile the *.cpp file just created

And these are error messages

    > compAD('vonb')
"adcomp.cmd  vonb" 
'findstr' is not recognized as an internal or external command,
operable program or batch file.
'findstr' is not recognized as an internal or external command,
operable program or batch file.
'findstr' is not recognized as an internal or external command,
operable program or batch file.
'findstr' is not recognized as an internal or external command,
operable program or batch file.

*** Compile: vonb.cpp
g++ -c  -O3 -fpermissive -I. -I"C:\Program Files (x86)\ADMB\include" -I"C:\Program Files (x86)\ADMB\contrib\include" -o vonb.obj vonb.cpp
In file included from C:\Program Files (x86)\ADMB\include/integrate.hpp:35:0,
                 from C:\Program Files (x86)\ADMB\include/integrate_wrap.hpp:6,
                 from C:\Program Files (x86)\ADMB\include/df1b2fun.h:101,
                 from C:\Program Files (x86)\ADMB\include/Vectorize.hpp:11,
                 from C:\Program Files (x86)\ADMB\include/admodel.h:2937,
                 from vonb.cpp:7:
C:\Program Files (x86)\ADMB\include/integrate.cpp: In function 'void gauss_kronrod::rdqagie(integr_fn, void*, Float*, int*, Float*, Float*, int*, Float*, Float*, int*, int*, Float*, Float*, Float*, Float*, int*, int*)':
C:\Program Files (x86)\ADMB\include/integrate.cpp:261:17: error: expected unqualified-id before '=' token
     Float small = 0.0, erro12;
                 ^
C:\Program Files (x86)\ADMB\include/integrate.cpp:584:2: error: 'erro12' was not declared in this scope
  erro12 = error1 + error2;
  ^~~~~~
C:\Program Files (x86)\ADMB\include/integrate.cpp:654:12: error: expected unqualified-id before '=' token
      small = .375;
            ^
In file included from c:\mingw\include\wtypes.h:2:0,
                 from c:\mingw\include\unknwn.h:15,
                 from c:\mingw\include\commdlg.h:470,
                 from c:\mingw\include\windows.h:68,
                 from C:\Program Files (x86)\ADMB\include/fvar.hpp:8760,
                 from C:\Program Files (x86)\ADMB\include/admodel.h:59,
                 from vonb.cpp:7:
C:\Program Files (x86)\ADMB\include/integrate.cpp:662:22: error: expected primary-expression before 'char'
  if (fabs(b1 - a1) > small) {
                      ^
C:\Program Files (x86)\ADMB\include/integrate.cpp:662:22: error: expected ')' before 'char'
C:\Program Files (x86)\ADMB\include/integrate.cpp:670:48: error: expected primary-expression before 'char'
      if (fabs(blist[maxerr] - alist[maxerr]) > small) {
                                                ^
C:\Program Files (x86)\ADMB\include/integrate.cpp:670:48: error: expected ')' before 'char'
C:\Program Files (x86)\ADMB\include/integrate.cpp:691:45: error: expected primary-expression before 'char'
   if (fabs(blist[maxerr] - alist[maxerr]) > small) {
                                             ^
C:\Program Files (x86)\ADMB\include/integrate.cpp:691:45: error: expected ')' before 'char'
In file included from C:\Program Files (x86)\ADMB\include/integrate.hpp:35:0,
                 from C:\Program Files (x86)\ADMB\include/integrate_wrap.hpp:6,
                 from C:\Program Files (x86)\ADMB\include/df1b2fun.h:101,
                 from C:\Program Files (x86)\ADMB\include/Vectorize.hpp:11,
                 from C:\Program Files (x86)\ADMB\include/admodel.h:2937,
                 from vonb.cpp:7:
C:\Program Files (x86)\ADMB\include/integrate.cpp:731:8: error: expected unqualified-id before '*=' token
  small *= .5;
        ^~
In file included from c:\mingw\include\wtypes.h:2:0,
                 from c:\mingw\include\unknwn.h:15,
                 from c:\mingw\include\commdlg.h:470,
                 from c:\mingw\include\windows.h:68,
                 from C:\Program Files (x86)\ADMB\include/fvar.hpp:8760,
                 from C:\Program Files (x86)\ADMB\include/admodel.h:59,
                 from vonb.cpp:7:
C:\Program Files (x86)\ADMB\include/integrate.cpp: In function 'void gauss_kronrod::rdqagse(integr_fn, void*, Float*, Float*, Float*, Float*, int*, Float*, Float*, int*, int*, Float*, Float*, Float*, Float*, int*, int*)':
C:\Program Files (x86)\ADMB\include/integrate.cpp:998:53: error: expected unqualified-id before 'char'
     Float correc = 0.0, erlarg = 0.0, ertest = 0.0, small = 0.0;
                                                     ^
In file included from C:\Program Files (x86)\ADMB\include/integrate.hpp:35:0,
                 from C:\Program Files (x86)\ADMB\include/integrate_wrap.hpp:6,
                 from C:\Program Files (x86)\ADMB\include/df1b2fun.h:101,
                 from C:\Program Files (x86)\ADMB\include/Vectorize.hpp:11,
                 from C:\Program Files (x86)\ADMB\include/admodel.h:2937,
                 from vonb.cpp:7:
C:\Program Files (x86)\ADMB\include/integrate.cpp:1359:12: error: expected unqualified-id before '=' token
      small = fabs(*b - *a) * .375;
            ^
In file included from c:\mingw\include\wtypes.h:2:0,
                 from c:\mingw\include\unknwn.h:15,
                 from c:\mingw\include\commdlg.h:470,
                 from c:\mingw\include\windows.h:68,
                 from C:\Program Files (x86)\ADMB\include/fvar.hpp:8760,
                 from C:\Program Files (x86)\ADMB\include/admodel.h:59,
                 from vonb.cpp:7:
C:\Program Files (x86)\ADMB\include/integrate.cpp:1367:22: error: expected primary-expression before 'char'
  if (fabs(b1 - a1) > small) {
                      ^
C:\Program Files (x86)\ADMB\include/integrate.cpp:1367:22: error: expected ')' before 'char'
C:\Program Files (x86)\ADMB\include/integrate.cpp:1375:48: error: expected primary-expression before 'char'
      if (fabs(blist[maxerr] - alist[maxerr]) > small) {
                                                ^
C:\Program Files (x86)\ADMB\include/integrate.cpp:1375:48: error: expected ')' before 'char'
C:\Program Files (x86)\ADMB\include/integrate.cpp:1396:45: error: expected primary-expression before 'char'
   if (fabs(blist[maxerr] - alist[maxerr]) > small) {
                                             ^
C:\Program Files (x86)\ADMB\include/integrate.cpp:1396:45: error: expected ')' before 'char'
In file included from C:\Program Files (x86)\ADMB\include/integrate.hpp:35:0,
                 from C:\Program Files (x86)\ADMB\include/integrate_wrap.hpp:6,
                 from C:\Program Files (x86)\ADMB\include/df1b2fun.h:101,
                 from C:\Program Files (x86)\ADMB\include/Vectorize.hpp:11,
                 from C:\Program Files (x86)\ADMB\include/admodel.h:2937,
                 from vonb.cpp:7:
C:\Program Files (x86)\ADMB\include/integrate.cpp:1435:8: error: expected unqualified-id before '*=' token
  small *= .5;
        ^~

Error: Unable to build vonb.cpp to vonb.obj

Error: Unable to build.

COMSPEC=C:\Windows\system32\cmd.exe.

PATH=C:\Program Files (x86)\ADMB\bin;C:\Program Files (x86)\ADMB\utilities\mingw\bin;C:\Program Files (x86)\ADMB\bin;C:\MinGW\msys\bin;C:\MinGW\bin.

ADMB_HOME: C:\Program Files (x86)\ADMB

Are you typing R commands directly into the command line, rather than into the R console? — Nicholas James Bailey, Sep 10 '18 at 13:56
@N.Bailey Thank you for your comment. Yes, I'm typing my code in the code editor. — Ellie, Sep 11 '18 at 00:16
@camille Thank you for your comment. I thought I replied to your comment but it's not here. Yes, I did! — Ellie, Sep 12 '18 at 00:44

'findstr' is not recognized as an internal or external command, operable program or batch file in R

0 Answers0