How do I compute the calinski-hrabasz f index in R for hierarchical clustering? I need it to determine the optimal amounts of clusters.
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R Package FPC might be the way to go.
calinhara(x,clustering,cn=max(clustering))
Description Calinski-Harabasz index for estimating the number of clusters, based on an observations/variablesmatrix here. A distance based version is available through cluster.stats.

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