Error in prediction script using CNN model for text classification

Question

I am try to write prediction part of script for the tutorial: https://mxnet.incubator.apache.org/tutorials/nlp/cnn.html

import mxnet as mx

from collections import Counter
import os
import re
import threading
import sys
import itertools
import numpy as np

from collections import namedtuple

SENTENCES_DIR = 'C:/code/mxnet/sentences'
CURRENT_DIR = 'C:/code/mxnet'

def clean_str(string):
    string = re.sub(r"[^A-Za-z0-9(),!?\'\`]", " ", string)
    string = re.sub(r"\'s", " \'s", string)
    string = re.sub(r"\'ve", " \'ve", string)
    string = re.sub(r"n\'t", " n\'t", string)
    string = re.sub(r"\'re", " \'re", string)
    string = re.sub(r"\'d", " \'d", string)
    string = re.sub(r"\'ll", " \'ll", string)
    string = re.sub(r",", " , ", string)
    string = re.sub(r"!", " ! ", string)
    string = re.sub(r"\(", " \( ", string)
    string = re.sub(r"\)", " \) ", string)
    string = re.sub(r"\?", " \? ", string)
    string = re.sub(r"\s{2,}", " ", string)
    return string.strip().lower()

def load_data_sentences(filename):
    sentences_file = open( filename, "r")
    # Tokenize
    x_text = [line.decode('Latin1').strip() for line in sentences_file.readlines()] 
    x_text = [clean_str(sent).split(" ") for sent in x_text]
    return x_text


def pad_sentences(sentences, padding_word=""):"
    sequence_length = max(len(x) for x in sentences)
    padded_sentences = []
    for i in range(len(sentences)):
        sentence = sentences[i]
        num_padding = sequence_length - len(sentence)
        new_sentence = sentence + [padding_word] * num_padding
        padded_sentences.append(new_sentence)
    return padded_sentences


def build_vocab(sentences):
    word_counts = Counter(itertools.chain(*sentences))
    vocabulary_inv = [x[0] for x in word_counts.most_common()]
    vocabulary = {x: i for i, x in enumerate(vocabulary_inv)}
    return vocabulary, vocabulary_inv

def build_input_data(sentences, vocabulary):
    x = np.array([
            [vocabulary[word] for word in sentence]
            for sentence in sentences])
    return x

def predict(mod, sen):
    mod.forward(Batch(data=[mx.nd.array(sen)]))
    prob = mod.get_outputs()[0].asnumpy()
    prob = np.squeeze(prob)
    a = np.argsort(prob)[::-1]    
    for i in a[0:5]:
        print('probability=%f' %(prob[i]))   


sentences = load_data_sentences( os.path.join( SENTENCES_DIR, 'test-pos-1.txt') )
sentences_padded = pad_sentences(sentences)
vocabulary, vocabulary_inv = build_vocab(sentences_padded)
x = build_input_data(sentences_padded, vocabulary)


Batch = namedtuple('Batch', ['data'])

sym, arg_params, aux_params = mx.model.load_checkpoint( os.path.join( CURRENT_DIR, 'cnn'), 19)
mod = mx.mod.Module(symbol=sym, context=mx.cpu(), label_names = None)
mod.bind(for_training=False, data_shapes=[('data', (50,56))], label_shapes=mod._label_shapes)
mod.set_params(arg_params, aux_params, allow_missing=True)

predict(mod, x)

But I got the error:

infer_shape error. Arguments: data: (50, 26L) Traceback (most recent call last): File "C:\code\mxnet\test2.py", line 152, in predict(mod, x) File "C:\code\mxnet\test2.py", line 123, in predict mod.forward(Batch(data=[mx.nd.array(sen)])) ...

MXNetError: Error in operator reshape0: [16:20:21] c:\projects\mxnet-distro-win\mxnet-build\src\operator\tensor./matrix_op-inl.h:187: Check failed: oshape.Size() == dshape.Size() (840000 vs. 390000) Target shape size is different to source. Target: [50,1,56,300] Source: [50,26,300]

Source is text file with 50 strings of sentences

Unfortunately I didn't found any help in Internet. Please take a look. OS: Windows 10. Python 2.7 Thank you.

score 1 · Answer 1 · answered Jul 17 '18 at 19:26

I believe the error you're having is because the padding of your input sentences is different than what the model expects. The way pad_sentences works is to pad the sentences to the length of the longest sentence passed in, so if you're using a different data set, you'll almost certainly get a different padding than your model's padding (which is 56). In this case, it looks like you're getting a padding of 26 (From the error message 'Source: [50, 26, 300]').

I was able to get your code to run successfully by modifying pad_sentence as follows and running it with sequence_length=56 to match the model.

def pad_sentences(sentences, sequence_length, padding_word=""):
    padded_sentences = []
    for i in range(len(sentences)):
        sentence = sentences[i]
        num_padding = sequence_length - len(sentence)
        new_sentence = sentence + [padding_word] * num_padding
        padded_sentences.append(new_sentence)
    return padded_sentences

N.B when you do get your successful run, you'll encounter an error because prob[i] is not a float.

def predict(mod, sen):
    mod.forward(Batch(data=[mx.nd.array(sen)]))
    prob = mod.get_outputs()[0].asnumpy()
    prob = np.squeeze(prob)
    a = np.argsort(prob)[::-1]    
    for i in a[0:5]:
        print('probability=%f' %(prob[i]))   << prob is a numpy.ndarray, not a float.

Vishaal

Error in prediction script using CNN model for text classification

1 Answers1