Have you tried adding generated sources folder as a source folder in eclipse? You can do this from eclipse (right click the generated sources or any folder in it > Build Path > Use as Source Folder) or you can use maven build helper plugin by adding something like below to your pom.xml
<!-- MAVEN ADD GENERATED-SOURCES TO CLASSPATH -->
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<version>${maven.plugin.build-helper.version}</version>
<executions>
<execution>
<phase>generate-sources</phase>
<goals>
<goal>add-source</goal>
</goals>
<configuration>
<sources>
<source>target/generated-sources/annotations</source>
</sources>
</configuration>
</execution>
</executions>
</plugin>